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Items: 8

1.

Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [SMF]

(Submitter supplied) Catalytic activity of the ISWI family of remodelers is critical for nucleosomal organization and transcription factor binding, including the insulator protein CTCF. To define which subcomplex mediate these diverse functions we phenotyped a panel of isogenic mouse stem cell lines each lacking one of six ISWI accessory subunits. Individual deletions of either CERF, RSF1, ACF, WICH or NoRC subcomplexes cause only moderate effects on the chromatin landscape, while removal of the NURF specific subunit BPTF leads to drastic reduction in chromatin accessibility and Snf2h ATPase localization around CTCF sites. more...
Organism:
Mus musculus
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL16417
6 Samples
Download data: TXT
Series
Accession:
GSE234293
ID:
200234293
2.

Illumina MiSeq (Mus musculus)

Platform
Accession:
GPL16417
ID:
100016417
3.

SMF_ESC_BPTFko_rep3

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL16417
Series:
GSE234293 GSE234295
Download data
Sample
Accession:
GSM7461665
ID:
307461665
4.

SMF_ESC_BPTFko_rep2

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL16417
Series:
GSE234293 GSE234295
Download data
Sample
Accession:
GSM7461664
ID:
307461664
5.

SMF_ESC_BPTFko_rep1

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL16417
Series:
GSE234293 GSE234295
Download data
Sample
Accession:
GSM7461663
ID:
307461663
6.

SMF_ESC_wt_rep3

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL16417
Series:
GSE234293 GSE234295
Download data
Sample
Accession:
GSM7461662
ID:
307461662
7.

SMF_ESC_wt_rep2

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL16417
Series:
GSE234293 GSE234295
Download data
Sample
Accession:
GSM7461661
ID:
307461661
8.

SMF_ESC_wt_rep1

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL16417
Series:
GSE234293 GSE234295
Download data
Sample
Accession:
GSM7461660
ID:
307461660
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Supplemental Content

db=gds|term=GSE234293[Accession]|query=1|qty=2|blobid=MCID_666db0f4909a3d46adac7d2f|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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