GSE207516[Accession] - GEO DataSets - NCBI

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Transcriptonal and epigenetic profiling of neuroblastoma cells based on CD49b expression

(Submitter supplied) This study was undertaken to assess heterogeneity within neuroblastoma cell populations, and to assess whether the integrin CD49b can distinguish different neuroblastoma phenotypes. Methods: We performed bulk RNA sequencing on Neuro-2a and SH-SY5Y neuroblastoma cells sorted based on CD49b expression, and CUT&RUN for H3K4me1 and H3K27ac on Neuro-2a cells sorted based on CD49b expression. Results: We find that CD49b expression identifies transcriptionally distinct neuroblastoma cell populations. more...

Organism:: Mus musculus; Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL24247 GPL24676
26 Samples

Download data: BED, BW, TXT

Series

Accession:: GSE207516

ID:: 200207516

PubMed Full text in PMC Similar studies

Select item 1000246762.

Illumina NovaSeq 6000 (Homo sapiens)

Organism:: Homo sapiens

16317 Series
918621 Samples

Platform

Accession:: GPL24676

ID:: 100024676

Select item 1000242473.

Illumina NovaSeq 6000 (Mus musculus)

Organism:: Mus musculus

13564 Series
685663 Samples

Platform

Accession:: GPL24247

ID:: 100024247

Select item 3062939264.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293926

ID:: 306293926

SRA Run Selector

Select item 3062939255.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293925

ID:: 306293925

SRA Run Selector

Select item 3062939246.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293924

ID:: 306293924

SRA Run Selector

Select item 3062939237.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293923

ID:: 306293923

SRA Run Selector

Select item 3062939228.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293922

ID:: 306293922

SRA Run Selector

Select item 3062939219.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293921

ID:: 306293921

SRA Run Selector

Select item 30629392010.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293920

ID:: 306293920

SRA Run Selector

Select item 30629391911.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293919

ID:: 306293919

SRA Run Selector

Select item 30629391812.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293918

ID:: 306293918

SRA Run Selector

Select item 30629391713.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293917

ID:: 306293917

SRA Run Selector

Select item 30629391614.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293916

ID:: 306293916

SRA Run Selector

Select item 30629391515.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293915

ID:: 306293915

SRA Run Selector

Select item 30629391416.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293914

ID:: 306293914

SRA Run Selector

Select item 30629391317.

Organism:: Mus musculus

Source name:: Neuro 2a cells – CUT&RUN

Platform:: GPL24247
Series:: GSE207516

Sample

Accession:: GSM6293913

ID:: 306293913

SRA Run Selector

Select item 30629391218.

Organism:: Mus musculus

Source name:: Neuro 2a cells – RNAseq

Platform:: GPL24247
Series:: GSE207516

Download data: TXT

Sample

Accession:: GSM6293912

ID:: 306293912

SRA Run Selector

Select item 30629391119.

Organism:: Mus musculus

Source name:: Neuro 2a cells – RNAseq

Platform:: GPL24247
Series:: GSE207516

Download data: TXT

Sample

Accession:: GSM6293911

ID:: 306293911

SRA Run Selector

Select item 30629391020.

Organism:: Mus musculus

Source name:: Neuro 2a cells – RNAseq

Platform:: GPL24247
Series:: GSE207516

Download data: TXT

Sample

Accession:: GSM6293910

ID:: 306293910

SRA Run Selector

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