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Items: 18

1.

INTACT method for gene expression and chromatin profiling of individual cell types within a tissue

(Submitter supplied) We used in vivo biotin labeling of a nuclear envelope protein in individual cell types followed by affinity isolation of labeled nuclei to measure gene expression and chromatin features of the hair and non-hair cell types of the Arabidopsis root epidermis. Keywords: Chromatin affinity-purification on microarray
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by genome tiling array; Expression profiling by genome tiling array
Platform:
GPL7143
16 Samples
Download data: BEDGRAPH, DAT, GFF, PAIR, PDF
Series
Accession:
GSE19654
ID:
200019654

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

Nimblegen_HD2_Arabidopsis

(Submitter supplied) The probes were based on TIGR5 Arabidopsis genome, release date 01212004. Protocol: please see manufacturer's web site
Organism:
Arabidopsis thaliana
7 Series
34 Samples
Download data: NDF, POS
Platform
Accession:
GPL7143
ID:
100007143

3.

WT_EXP_2_(369194)

Organism:
Arabidopsis thaliana
Source name:
amplified root cDNA. (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM553504
ID:
300553504

4.

WT_EXP_1_(369196-2)

Organism:
Arabidopsis thaliana
Source name:
amplified root cDNA (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM553503
ID:
300553503

5.

NUC_EXP_2_(369136)

Organism:
Arabidopsis thaliana
Source name:
amplified nuclear cDNA. (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM553426
ID:
300553426

6.

NUC_EXP_1_(369174)

Organism:
Arabidopsis thaliana
Source name:
amplified nuclear cDNA. (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM553424
ID:
300553424

7.

GL2_K4_2_(294553-2)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K4me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490213
ID:
300490213

8.

GL2_K4_1_(294553-2)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K4me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490212
ID:
300490212

9.

GL2_K27_2_(294543-3)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K27me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490211
ID:
300490211

10.

GL2_K27_1_(294543-2)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K27me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490210
ID:
300490210

11.

GL2_EXP_2_(294548)

Organism:
Arabidopsis thaliana
Source name:
INTACT-derived amplified nuclear cDNA. (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM490209
ID:
300490209

12.

GL2_EXP_1_(294548)

Organism:
Arabidopsis thaliana
Source name:
INTACT-derived amplified nuclear cDNA. (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM490208
ID:
300490208

13.

ADF_K4_2_(294346-2)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K4me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490207
ID:
300490207

14.

ADF_K4_1_(294553-2)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K4me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490206
ID:
300490206

15.

ADF_K27_2_(293003-2)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K27me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490205
ID:
300490205

16.

ADF_K27_1_(294548-2)

Organism:
Arabidopsis thaliana
Source name:
Amplified H3K27me3 ChIP. (channel 1) Amplified H3 ChIP. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, GFF, PAIR
Sample
Accession:
GSM490204
ID:
300490204

17.

ADF_EXP_2_(294543)

Organism:
Arabidopsis thaliana
Source name:
INTACT-derived amplified nuclear cDNA. (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM490203
ID:
300490203

18.

ADF_EXP_1_(294548)

Organism:
Arabidopsis thaliana
Source name:
INTACT-derived amplified nuclear cDNA. (channel 1) Fragmented genomic DNA. (channel 2)
Platform:
GPL7143
Series:
GSE19654
Download data: BEDGRAPH, DAT, GFF, PAIR
Sample
Accession:
GSM490202
ID:
300490202

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