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Items: 1 to 20 of 25

1.

Cell and chromatin transitions in intestinal stem cell regeneration

(Submitter supplied) The progeny of intestinal stem cells (ISCs) dedifferentiate in response to ISC attrition. The precise cell sources, transitional states, and chromatin remodeling behind this activity remain unclear. In the skin, stem cell recovery after injury preserves an epigenetic memory of the damage response; whether similar memories arise and persist in regenerated ISCs is not known. We address these questions by examining gene activity and open chromatin at the resolution of single Neurog3-labeled mouse intestinal crypt cells, hence deconstructing forward and reverse differentiation of the intestinal secretory (Sec) lineage. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL21273 GPL24247
22 Samples
Download data: BW, ZIP
Series
Accession:
GSE183299
ID:
200183299

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NovaSeq 6000 (Mus musculus)

Organism:
Mus musculus
13498 Series
684837 Samples
Download data
Platform
Accession:
GPL24247
ID:
100024247

3.

HiSeq X Ten (Mus musculus)

Organism:
Mus musculus
1759 Series
39734 Samples
Download data
Platform
Accession:
GPL21273
ID:
100021273

4.

Intestinal_stem_cell_ATAC_Rep_2 (intestinal crypt cell dedifferentiation)

Organism:
Mus musculus
Source name:
Intestinal stem cells
Platform:
GPL21273
Series:
GSE183299
Download data: BW
Sample
Accession:
GSM5705298
ID:
305705298

SRA Run Selector

5.

Intestinal_stem_cell_ATAC_Rep_1 (intestinal crypt cell dedifferentiation)

Organism:
Mus musculus
Source name:
Intestinal stem cells
Platform:
GPL21273
Series:
GSE183299
Download data: BW
Sample
Accession:
GSM5705297
ID:
305705297

SRA Run Selector

6.

DT_72h_scATAC

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555206
ID:
305555206

SRA Run Selector

7.

DT_72h_scRNA

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555205
ID:
305555205

SRA Run Selector

8.

DT_48h_scATAC_rep2

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555204
ID:
305555204

SRA Run Selector

9.

DT_48h_scATAC_rep1

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555203
ID:
305555203

SRA Run Selector

10.

DT_48h_scRNA_rep3

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555202
ID:
305555202

SRA Run Selector

11.

DT_48h_scRNA_rep2

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555201
ID:
305555201

SRA Run Selector

12.

DT_48h_scRNA_rep1

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555200
ID:
305555200

SRA Run Selector

13.

DT_24h_scATAC_rep2

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555199
ID:
305555199

SRA Run Selector

14.

DT_24h_scATAC_rep1

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555198
ID:
305555198

SRA Run Selector

15.

DT_24h_scRNA_rep3

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555197
ID:
305555197

SRA Run Selector

16.

DT_24h_scRNA_rep2

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555196
ID:
305555196

SRA Run Selector

17.

DT_24h_scRNA_rep1

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555195
ID:
305555195

SRA Run Selector

18.

DT_12h_scATAC

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555194
ID:
305555194

SRA Run Selector

19.

DT_12h_scRNA

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555193
ID:
305555193

SRA Run Selector

20.

Normal 72h_scATAC

Organism:
Mus musculus
Source name:
Small intestine
Platform:
GPL24247
Series:
GSE183299
Download data: ZIP
Sample
Accession:
GSM5555192
ID:
305555192

SRA Run Selector

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