GSE148448[Accession] - GEO DataSets - NCBI

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Select item 2001484481.

Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells

(Submitter supplied) In situ assays of transcription factor (TF) binding are confounded by cellular heterogeneity and represent averaged profiles in complex tissues. Single cell RNA-seq (scRNA-seq) is capable of resolving different cell types based on gene expression profiles, but no technology exists to directly link specific cell types to the binding pattern of TFs in those cell types. Here, we present self-reporting transposons (SRTs) and their use in single cell calling cards (scCC), a novel assay for simultaneously capturing gene expression profiles and mapping TF binding sites in single cells. more...

Organism:: Mus musculus; Homo sapiens

Type:: Other

8 related Platforms
27 Samples

Download data: BAM, CSV, LOOM, TSV, TXT

Series

Accession:: GSE148448

ID:: 200148448

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000246762.

Illumina NovaSeq 6000 (Homo sapiens)

Organism:: Homo sapiens

10961 Series
747412 Samples

Platform

Accession:: GPL24676

ID:: 100024676

Select item 1000242473.

Illumina NovaSeq 6000 (Mus musculus)

Organism:: Mus musculus

8772 Series
586413 Samples

Platform

Accession:: GPL24247

ID:: 100024247

Select item 1000222454.

Illumina HiSeq 2500 (Homo sapiens; Mus musculus)

Organism:: Homo sapiens; Mus musculus

45 Series
2076 Samples

Platform

Accession:: GPL22245

ID:: 100022245

Select item 1000212905.

Illumina HiSeq 3000 (Homo sapiens)

Organism:: Homo sapiens

973 Series
27521 Samples

Platform

Accession:: GPL21290

ID:: 100021290

Select item 1000194156.

Illumina NextSeq 500 (Homo sapiens; Mus musculus)

Organism:: Homo sapiens; Mus musculus

92 Series
1631 Samples

Platform

Accession:: GPL19415

ID:: 100019415

Select item 1000190577.

Illumina NextSeq 500 (Mus musculus)

Organism:: Mus musculus

8823 Series
271053 Samples

Platform

Accession:: GPL19057

ID:: 100019057

Select item 1000185738.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

11031 Series
311340 Samples

Platform

Accession:: GPL18573

ID:: 100018573

Select item 1000167919.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11211 Series
313311 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 30447166010.

Mouse-Cortex_HyPBase_scCC

Organism:: Mus musculus

Source name:: Mouse cortex

Platform:: GPL19057
Series:: GSE148448

Download data: BAM, CSV, TSV, TXT

Sample

Accession:: GSM4471660

ID:: 304471660

SRA Run Selector

Select item 30447165811.

HepG2_FOXA2-HyPBase_scCC

Organism:: Homo sapiens

Source name:: HepG2

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TSV, TXT

Sample

Accession:: GSM4471658

ID:: 304471658

SRA Run Selector

Select item 30447165612.

HepG2_HyPBase_scCC

Organism:: Homo sapiens

Source name:: HepG2

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TXT

Sample

Accession:: GSM4471656

ID:: 304471656

SRA Run Selector

Select item 30447165413.

OCM1A_BAP1-HyPBase_scCC

Organism:: Homo sapiens

Source name:: OCM-1A

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TSV, TXT

Sample

Accession:: GSM4471654

ID:: 304471654

SRA Run Selector

Select item 30447165214.

OCM1A_HyPBase_scCC

Organism:: Homo sapiens

Source name:: OCM-1A

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TXT

Sample

Accession:: GSM4471652

ID:: 304471652

SRA Run Selector

Select item 30447165015.

K562_SP1-HyPBase_scCC

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TSV, TXT

Sample

Accession:: GSM4471650

ID:: 304471650

SRA Run Selector

Select item 30447164816.

HCT-116_SP1-HyPBase_scCC

Organism:: Homo sapiens

Source name:: HCT-116

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TSV, TXT

Sample

Accession:: GSM4471648

ID:: 304471648

SRA Run Selector

Select item 30447164617.

HCT-116_K562_HyPBase_scCC

Organism:: Homo sapiens

Source name:: HCT-116 & K562

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TSV, TXT

Sample

Accession:: GSM4471646

ID:: 304471646

SRA Run Selector

Select item 30447163518.

DNA_v_RNA_RNACC

Organism:: Homo sapiens

Source name:: HCT-116

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TXT

Sample

Accession:: GSM4471635

ID:: 304471635

SRA Run Selector

Select item 30447163419.

DNA_v_RNA_DNACC

Organism:: Homo sapiens

Source name:: HCT-116

Platform:: GPL18573
Series:: GSE148448

Download data: BAM, TXT

Sample

Accession:: GSM4471634

ID:: 304471634

SRA Run Selector

Select item 30447164420.

HCT-116_N2a_HyPBase_scCC

Organism:: Homo sapiens; Mus musculus

Source name:: HCT-116 & N2a

Platform:: GPL19415
Series:: GSE148448

Download data: BAM, TXT

Sample

Accession:: GSM4471644

ID:: 304471644

SRA Run Selector

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