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Items: 15

1.

A comparison of evolutionary changes and constraints on gene regulation between fin and limb development [ATAC-seq]

(Submitter supplied) We report time-series transcriptome of developing bamboo shark fin buds and mouse forelimb buds, and open chromatin regions of developing mouse forelimb buds. The major contributions of this study are 1) transcriptomic data with an accurate orthology map for a systematic comparison between the two species; 2) high quality chromatin accessibility data for mouse limb development; 3) discovery of mass heterochronic genes between fins and limbs; 4) hourglass-shaped conservation between fins and limbs, providing insights into a general trend of gene regulatory evolution.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL21273
13 Samples
Download data: BW
Series
Accession:
GSE136415
ID:
200136415
2.

HiSeq X Ten (Mus musculus)

Platform
Accession:
GPL21273
ID:
100021273
3.

ATAC-seq input

Organism:
Mus musculus
Source name:
mouse genome
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data
Sample
Accession:
GSM4048700
ID:
304048700
4.

ATAC-seq E12.5 replicate 3

Organism:
Mus musculus
Source name:
forelimb bud at E12.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048699
ID:
304048699
5.

ATAC-seq E12.5 replicate 2

Organism:
Mus musculus
Source name:
forelimb bud at E12.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048698
ID:
304048698
6.

ATAC-seq E12.5 replicate 1

Organism:
Mus musculus
Source name:
forelimb bud at E12.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048697
ID:
304048697
7.

ATAC-seq E11.5 replicate 3

Organism:
Mus musculus
Source name:
forelimb bud at E11.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048696
ID:
304048696
8.

ATAC-seq E11.5 replicate 2

Organism:
Mus musculus
Source name:
forelimb bud at E11.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048695
ID:
304048695
9.

ATAC-seq E11.5 replicate 1

Organism:
Mus musculus
Source name:
forelimb bud at E11.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048694
ID:
304048694
10.

ATAC-seq E10.5 replicate 3

Organism:
Mus musculus
Source name:
forelimb bud at E10.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048693
ID:
304048693
11.

ATAC-seq E10.5 replicate 2

Organism:
Mus musculus
Source name:
forelimb bud at E10.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048692
ID:
304048692
12.

ATAC-seq E10.5 replicate 1

Organism:
Mus musculus
Source name:
forelimb bud at E10.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048691
ID:
304048691
13.

ATAC-seq E09.5 replicate 3

Organism:
Mus musculus
Source name:
forelimb bud at E09.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048690
ID:
304048690
14.

ATAC-seq E09.5 replicate 2

Organism:
Mus musculus
Source name:
forelimb bud at E09.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048689
ID:
304048689
15.

ATAC-seq E09.5 replicate 1

Organism:
Mus musculus
Source name:
forelimb bud at E09.5
Platform:
GPL21273
Series:
GSE136415 GSE136445
Download data: BW
Sample
Accession:
GSM4048688
ID:
304048688
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Supplemental Content

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