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Items: 1 to 20 of 56

1.

A genome-wide framework for mapping gene regulation via cellular genetic screens

(Submitter supplied) Over one million candidate regulatory elements have been identified across the human genome, but nearly all are unvalidated and their target genes uncertain. Approaches based on human genetics are limited in scope to common variants, and in resolution by linkage disequilibrium. We present a multiplex, eQTL-inspired framework for mapping enhancer-gene pairs by introducing random combinations of CRISPR/Cas9-mediated perturbations to each of many cells, followed by single-cell RNA-seq. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL24676 GPL18573
53 Samples
Download data: MTX, RDS, TSV, TXT
Series
Accession:
GSE120861
ID:
200120861
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
4.

sequence deletion validation (eGLUL) clone 3 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417303
ID:
303417303
5.

sequence deletion validation (eGLUL) clone 2 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417302
ID:
303417302
6.

sequence deletion validation (eGLUL) clone 1 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417301
ID:
303417301
7.

sequence deletion validation (eCITED2) clone 3 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417300
ID:
303417300
8.

sequence deletion validation (eCITED2) clone 2 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417299
ID:
303417299
9.

sequence deletion validation (eCITED2) clone 1 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417298
ID:
303417298
10.

sequence deletion validation (eNMU) clone 6 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417297
ID:
303417297
11.

sequence deletion validation (eNMU) clone 5 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417296
ID:
303417296
12.

sequence deletion validation (eNMU) clone 4 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417295
ID:
303417295
13.

sequence deletion validation (eNMU) clone 3 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417294
ID:
303417294
14.

sequence deletion validation (eNMU) clone 2 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417293
ID:
303417293
15.

sequence deletion validation (eNMU) clone 1 Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417292
ID:
303417292
16.

CRISPRi singleton (NTC) Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417291
ID:
303417291
17.

CRISPRi singleton (Null6_chr20.111) Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417290
ID:
303417290
18.

CRISPRi singleton (Null5_chr1.5079) Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417289
ID:
303417289
19.

CRISPRi singleton (Null4_chr12.1623) Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417288
ID:
303417288
20.

CRISPRi singleton (Null3_chr3.1742) Bulk-seq

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL18573
Series:
GSE120861
Download data
Sample
Accession:
GSM3417287
ID:
303417287
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Supplemental Content

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