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1.

Genome-wide CRISPR-Cas9 interrogation of splicing networks reveals a mechanism for recognition of autism-misregulated neuronal microexons [SPAR-seq]

(Submitter supplied) Alternative splicing has critical roles in diverse cellular, developmental and pathological processes. However, the full repertoires of factors that control individual splicing events are not known. We describe a CRISPR-based screening strategy for the systematic identification of genes that control 3-27 nt microexons with functions in nervous system development and that are commonly disrupted in autism. more...
Organism:
Mus musculus
Type:
Other
Platform:
GPL16417
48 Samples
Download data: FA, TAB
Series
Accession:
GSE120164
ID:
200120164
2.

Illumina MiSeq (Mus musculus)

Platform
Accession:
GPL16417
ID:
100016417
3.

SPAR-Seq of multi-exon regions of selected genes in N2A, Srrm4+siSrrm3 knockdown (T024), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395181
ID:
303395181
4.

SPAR-Seq of multi-exon regions of selected genes in N2A, Srsf6 knockdown (T023), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395180
ID:
303395180
5.

SPAR-Seq of multi-exon regions of selected genes in N2A, Rbm17 knockdown (T022), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395179
ID:
303395179
6.

SPAR-Seq of multi-exon regions of selected genes in N2A, Ncbp1 knockdown (T021), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395178
ID:
303395178
7.

SPAR-Seq of multi-exon regions of selected genes in N2A, Ippk knockdown (T020), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395177
ID:
303395177
8.

SPAR-Seq of multi-exon regions of selected genes in N2A, Fbxw11 knockdown (T019), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395176
ID:
303395176
9.

SPAR-Seq of multi-exon regions of selected genes in N2A, Qk knockdown (T018), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395175
ID:
303395175
10.

SPAR-Seq of multi-exon regions of selected genes in N2A, Ptbp1 knockdown (T017), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395174
ID:
303395174
11.

SPAR-Seq of multi-exon regions of selected genes in N2A, control non-targeting knockdown (T016), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395173
ID:
303395173
12.

SPAR-Seq of multi-exon regions of selected genes in N2A, Fam133b knockdown (T015), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395172
ID:
303395172
13.

SPAR-Seq of multi-exon regions of selected genes in N2A, Hira knockdown (T014), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395171
ID:
303395171
14.

SPAR-Seq of multi-exon regions of selected genes in N2A, CBP knockdown (T013), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395170
ID:
303395170
15.

SPAR-Seq of multi-exon regions of selected genes in N2A, Ep300 knockdown (T012), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395169
ID:
303395169
16.

SPAR-Seq of multi-exon regions of selected genes in N2A, Fxr1 knockdown (T011), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395168
ID:
303395168
17.

SPAR-Seq of multi-exon regions of selected genes in N2A, Strbp knockdown (T010), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395167
ID:
303395167
18.

SPAR-Seq of multi-exon regions of selected genes in N2A, Cdc5l knockdown (T009), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395166
ID:
303395166
19.

SPAR-Seq of multi-exon regions of selected genes in N2A, Rnps1 knockdown (T008), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395165
ID:
303395165
20.

SPAR-Seq of multi-exon regions of selected genes in N2A, Gpatch8 knockdown (T007), replicate 2

Organism:
Mus musculus
Source name:
Neuroblastoma cells
Platform:
GPL16417
Series:
GSE112601 GSE120164
Download data
Sample
Accession:
GSM3395164
ID:
303395164
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