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Items: 1 to 20 of 26

1.

Nodal signaling maintains H3K18ac landscape to promote mesendodermal differentiation through TRIM33

(Submitter supplied) The epigenome of a cell is established and maintained by chromatin modifiers and remodelers, which are recruited to the chromatin by specific transcription factors. In this report, we show that nodal cross-talks with the epigenome through TRIM33-H3K18ac to mediate mesendodermal genes expression. The chromatin accessibility at mesendodermal genes depends on TRIM33. Moreover, histone acetylation is essential for TRIM33 recruitment to many nodal target genes involved in mesendodermal differentiation. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL17021 GPL21273
23 Samples
Download data: WIG, XLSX
Series
Accession:
GSE115169
ID:
200115169
2.

HiSeq X Ten (Mus musculus)

Platform
Accession:
GPL21273
ID:
100021273
3.

Illumina HiSeq 2500 (Mus musculus)

Platform
Accession:
GPL17021
ID:
100017021
4.

RNA-seq WT 2 SB2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168503
ID:
303168503
5.

RNA-seq WT 2 Ac2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168502
ID:
303168502
6.

RNA-seq WT 1 SB2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168501
ID:
303168501
7.

RNA-seq WT 1 Ac2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168500
ID:
303168500
8.

RNA-seq KO 4 SB2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168499
ID:
303168499
9.

RNA-seq KO 4 Ac2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168498
ID:
303168498
10.

RNA-seq KO 1 SB2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168497
ID:
303168497
11.

RNA-seq KO 1 Ac2h

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168496
ID:
303168496
12.

RNA-seq ES LKO Ac II

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168495
ID:
303168495
13.

RNA-seq ES LKO Ac I

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL17021
Series:
GSE115169
Download data
Sample
Accession:
GSM3168494
ID:
303168494
14.

H3K27ac ChIP-seq EB SB

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL21273
Series:
GSE115169
Download data: WIG
Sample
Accession:
GSM3168493
ID:
303168493
15.

H3K27ac ChIP-seq EB AC

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL21273
Series:
GSE115169
Download data: WIG
Sample
Accession:
GSM3168492
ID:
303168492
16.

H3K18ac ChIP-seq EB SB

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL21273
Series:
GSE115169
Download data: WIG
Sample
Accession:
GSM3168491
ID:
303168491
17.

H3K18ac ChIP-seq EB AC

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL21273
Series:
GSE115169
Download data: WIG
Sample
Accession:
GSM3168490
ID:
303168490
18.

H3K18ac ChIP-seq ES

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL21273
Series:
GSE115169
Download data: WIG
Sample
Accession:
GSM3168489
ID:
303168489
19.

ATAC-seq EB KO re2

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL21273
Series:
GSE115169
Download data: WIG
Sample
Accession:
GSM3168488
ID:
303168488
20.

ATAC-seq EB WT re2

Organism:
Mus musculus
Source name:
mouse embryonic stem cell
Platform:
GPL21273
Series:
GSE115169
Download data: WIG
Sample
Accession:
GSM3168487
ID:
303168487
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Supplemental Content

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