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Items: 1 to 20 of 83

1.

Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution

(Submitter supplied) We introduce Chemical-crosslinking Assisted Proximity Capture (CAP-C), a method that utilizes multi-functional chemical crosslinkers with defined physical sizes to directly assess spatial distances between nuclear genomic sequences. CAP-C avoids limitations caused by extensive protein-DNA crosslinking in most in situ methods, and thus generates chromatin contact maps at high resolution with low background noise.
Organism:
Drosophila melanogaster; Homo sapiens; Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other
6 related Platforms
76 Samples
Download data: BIGWIG, HIC, NARROWPEAK, TXT
Series
Accession:
GSE110061
ID:
200110061
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

Illumina NovaSeq 6000 (Mus musculus)

Platform
Accession:
GPL24247
ID:
100024247
4.

Illumina HiSeq 4000 (Mus musculus)

Platform
Accession:
GPL21103
ID:
100021103
5.

Illumina NextSeq 500 (Drosophila melanogaster)

Organism:
Drosophila melanogaster
465 Series
11454 Samples
Download data
Platform
Accession:
GPL19132
ID:
100019132
6.

Illumina NextSeq 500 (Mus musculus)

Platform
Accession:
GPL19057
ID:
100019057
7.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
8.

BL-CAP-C S2 G7 rep1

Organism:
Drosophila melanogaster
Source name:
fruit fly embryos
Platform:
GPL19132
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626621
ID:
304626621
9.

BL-CAP-C S2 G5 rep1

Organism:
Drosophila melanogaster
Source name:
fruit fly embryos
Platform:
GPL19132
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626620
ID:
304626620
10.

BL-CAP-C S2 G3 rep1

Organism:
Drosophila melanogaster
Source name:
fruit fly embryos
Platform:
GPL19132
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626619
ID:
304626619
11.

DNaseHiC F123 rep2

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626646
ID:
304626646
12.

DNaseHiC F123 rep1

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626645
ID:
304626645
13.

BL-CAP-C F123 Triptolide

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626644
ID:
304626644
14.

BL-CAP-C F123 Hexanediol

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626643
ID:
304626643
15.

BL-CAP-C F123 (Native) G9 rep1

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626642
ID:
304626642
16.

BL-CAP-C F123 (Native) G7 rep1

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626641
ID:
304626641
17.

BL-CAP-C F123 (Native) G5 rep1

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626640
ID:
304626640
18.

BL-CAP-C F123 CTCF-AID POLII G5 rep2

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626635
ID:
304626635
19.

BL-CAP-C F123 CTCF-AID POLII G5 rep1

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626634
ID:
304626634
20.

BL-CAP-C F123 CTCF-AID KO-POLII G5 rep2

Organism:
Mus musculus
Source name:
mouse embryonic stem cells
Platform:
GPL24247
Series:
GSE110061
Download data: HIC
Sample
Accession:
GSM4626633
ID:
304626633
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Supplemental Content

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