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Items: 1 to 20 of 429

1.

Single cell chromatin immunocleavage sequencing (scChIC-Seq) to profile histone modification

(Submitter supplied) We report a single-cell chromatin immunocleavage sequencing (scChIC-seq) methodology for analyzing histone modifications, which involves targeting of the micrococcal nuclease (MNase) by tethering it to an antibody and selective PCR amplification of cleaved target sites. We show that the protocol reliably detects the H3K4me3 and H3K27me3 target sites in single human white blood cells (WBC), resulting data for successful identification of unique blood cell types based on clustering analysis. more...
Organism:
Mus musculus; Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other
Platforms:
GPL13112 GPL21290 GPL21493
425 Samples
Download data: BED, BEDGRAPH, TXT
Series
Accession:
GSE105012
ID:
200105012
2.

Illumina HiSeq 3000 (Mus musculus)

Platform
Accession:
GPL21493
ID:
100021493
3.

Illumina HiSeq 3000 (Homo sapiens)

Platform
Accession:
GPL21290
ID:
100021290
4.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
5.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-106

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476270
ID:
303476270
6.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-105

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476269
ID:
303476269
7.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-104

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476268
ID:
303476268
8.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-103

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476267
ID:
303476267
9.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-102

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476266
ID:
303476266
10.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-101

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476265
ID:
303476265
11.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-100

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476264
ID:
303476264
12.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-99

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476263
ID:
303476263
13.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-98

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476262
ID:
303476262
14.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-97

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476261
ID:
303476261
15.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-96

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476260
ID:
303476260
16.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-95

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476259
ID:
303476259
17.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-94

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476258
ID:
303476258
18.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-93

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476257
ID:
303476257
19.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-92

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476256
ID:
303476256
20.

human white blood cells single cells H3K27me3 Ab+PA-Mnase-91

Organism:
Homo sapiens
Source name:
white blood cells
Platform:
GPL21290
Series:
GSE105012
Download data: BED, BEDGRAPH, TXT
Sample
Accession:
GSM3476255
ID:
303476255
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Supplemental Content

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