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Items: 1 to 20 of 26

1.

An optimized FAIRE procedure for low cell numbers in yeast.

(Submitter supplied) We report an optimised low-input FAIRE-seq (Formaldehyde-Assisted Isolation of Regulatory Elements) procedure to assay chromatin accessibility from yeast colonies. Sensitivity, specificity and reproducibility of the scaled-down method are comparable to that of regular, higher input amounts, assayed over a 100-fold range. The method enables epigenetic analysis of chromatin structure to be assayed without the need for liquid culture, thus opening the possibility to study wild yeasts that form colonies, or those can be isolated in sufficient amounts in situ, from environmental samples.
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL19756
24 Samples
Download data: NARROWPEAK
Series
Accession:
GSE104124
ID:
200104124
2.

Illumina NextSeq 500 (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
442 Series
12407 Samples
Download data
Platform
Accession:
GPL19756
ID:
100019756
3.

500-I-R3

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790338
ID:
302790338
4.

500-F-R3

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790337
ID:
302790337
5.

500-I-R2

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790336
ID:
302790336
6.

500-F-R2

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790335
ID:
302790335
7.

500-I-R1

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790334
ID:
302790334
8.

500-F-R1

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790333
ID:
302790333
9.

100-I-R3

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790332
ID:
302790332
10.

100-F-R3

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790331
ID:
302790331
11.

100-I-R2

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790330
ID:
302790330
12.

100-F-R2

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790329
ID:
302790329
13.

100-I-R1

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790328
ID:
302790328
14.

100-F-R1

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790327
ID:
302790327
15.

20-I-R3

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790326
ID:
302790326
16.

20-F-R3

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790325
ID:
302790325
17.

20-I-R2

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790324
ID:
302790324
18.

20-F-R2

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790323
ID:
302790323
19.

20-I-R1

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data
Sample
Accession:
GSM2790322
ID:
302790322
20.

20-F-R1

Organism:
Saccharomyces cerevisiae
Source name:
Yeast colony
Platform:
GPL19756
Series:
GSE104124
Download data: NARROWPEAK
Sample
Accession:
GSM2790321
ID:
302790321
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Supplemental Content

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