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Items: 10

1.

Role of the DNR- and FNR- type regulators in regulation of the denitrification genes in Roseobacter denitrificans OCh114

(Submitter supplied) An aerobic photosynthetic bacterium Roseobacter denitrificans OCh114 has two DNR- and one FNR-type transcriptional regulators, which are predicted to sense nitric oxide and oxygen, respectively. To investigate the role of these regulators in regulation of the denitrification genes, transcriptome profiles of mutant strains of R. denitrificans OCh114 deficient in the genes for the DNR- or FNR-type regulators were determined by NimbleGen Prokaryotic Expression array (12x135K).
Organism:
Roseobacter denitrificans OCh 114
Type:
Expression profiling by array
Platforms:
GPL28684 GPL28767
10 Samples
Download data: PAIR
Series
Accession:
GSE153074
ID:
200153074

Analyze with GEO2R

2.

NimbleGen Roseobacter denitrificans OCh114 12X135K array Univ. of Tokyo v2.0

(Submitter supplied) NimbleGen Prokaryotic Expression array (12x135K). A gene expression design for 4,129 sequences is based on the genome sequence of Roseobacter denitrificans OCh114. The length of probes is 60-mer and the number of probes is 11 pairs per gene. Each probe is replicated 3 times. Probe sequences are available in the '2009-06-23_RDKK199_Rden_60mer_expr.ndf' supplementary file. Protocol: High density DNA array prepared with Maskless Array Synthesizer (MAS) technology.
Organism:
Roseobacter denitrificans OCh 114
1 Series
8 Samples
Download data: NDF, NGD
Platform
Accession:
GPL28767
ID:
100028767

3.

fnrL mutant, denitrification_shift_2

Organism:
Roseobacter denitrificans OCh 114
Source name:
fnrL mutant, denitrification_shift dark replicate 2
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633803
ID:
304633803

4.

fnrL mutant, denitrification_shift_1

Organism:
Roseobacter denitrificans OCh 114
Source name:
fnrL mutant, denitrification_shift dark replicate 1
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633802
ID:
304633802

5.

dnr1 dnr2 mutant, denitrification_shift_2

Organism:
Roseobacter denitrificans OCh 114
Source name:
dnr1 dnr 2 double mutant, denitrification_shift dark replicate 2
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633801
ID:
304633801

6.

dnr1 dnr2 mutant, denitrification_shift_1

Organism:
Roseobacter denitrificans OCh 114
Source name:
dnr1 dnr 2 double mutant, denitrification_shift dark replicate 1
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633800
ID:
304633800

7.

dnr2 mutant, denitrification_shift_2

Organism:
Roseobacter denitrificans OCh 114
Source name:
dnr2 mutant, denitrification_shift dark replicate 2
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633799
ID:
304633799

8.

dnr2 mutant, denitrification_shift_1

Organism:
Roseobacter denitrificans OCh 114
Source name:
dnr2 mutant, denitrification_shift dark replicate 1
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633798
ID:
304633798

9.

dnr1 mutant, denitrification_shift_2

Organism:
Roseobacter denitrificans OCh 114
Source name:
dnr1 mutant, denitrification_shift dark replicate 2
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633797
ID:
304633797

10.

dnr1 mutant, denitrification_shift_1

Organism:
Roseobacter denitrificans OCh 114
Source name:
dnr1 mutant, denitrification_shift dark replicate 1
Platform:
GPL28767
Series:
GSE153074
Download data: PAIR
Sample
Accession:
GSM4633796
ID:
304633796

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