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Items: 15

1.

Non-canonical base modifications of bacterial origin in a eukaryotic genome

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Adineta vaga
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL27728 GPL27729 GPL27727
17 Samples
Download data: BED, BW
Series
Accession:
GSE140052
ID:
200140052

PubMed Full text in PMC Similar studies

2.

Non-canonical base modifications of bacterial origin in a eukaryotic genome [RNA-seq]

(Submitter supplied) Methylation of cytosines at the 5th carbon position of the aromatic ring has long been regarded as the predominant type of DNA base modification in eukaryotes. Often called “the fifth base”, C5-methylcytosine (5mC) plays an important role in genome defense against mobile genetic elements, and is mostly associated with transcriptional silencing, establishment of the closed chromatin configuration, and repressive histone modifications. more...
Organism:
Adineta vaga
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL27727 GPL27729
5 Samples
Download data: FASTA, GFF3, TXT
Series
Accession:
GSE140051
ID:
200140051

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Non-canonical base modifications of bacterial origin in a eukaryotic genome [ChIP-seq]

(Submitter supplied) Methylation of cytosines at the 5th carbon position of the aromatic ring has long been regarded as the predominant type of DNA base modification in eukaryotes. Often called “the fifth base”, C5-methylcytosine (5mC) plays an important role in genome defense against mobile genetic elements, and is mostly associated with transcriptional silencing, establishment of the closed chromatin configuration, and repressive histone modifications. more...
Organism:
Adineta vaga
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL27727
8 Samples
Download data: BED
Series
Accession:
GSE140049
ID:
200140049

PubMed Full text in PMC Similar studies SRA Run Selector

4.

Illumina NextSeq 500 (Adineta vaga)

Organism:
Adineta vaga
3 Series
11 Samples
Download data
Platform
Accession:
GPL27727
ID:
100027727

5.

Av-RNA-Rep3

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140051 GSE140052
Download data
Sample
Accession:
GSM4152126
ID:
304152126

SRA Run Selector

6.

Av-RNA-Rep2

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140051 GSE140052
Download data
Sample
Accession:
GSM4152125
ID:
304152125

SRA Run Selector

7.

Av-RNA-Rep1

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140051 GSE140052
Download data
Sample
Accession:
GSM4152124
ID:
304152124

SRA Run Selector

8.

Av input DNA

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data
Sample
Accession:
GSM4152117
ID:
304152117

SRA Run Selector

9.

H3K27me3_ChIP-seq_Av

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data: BED
Sample
Accession:
GSM4152116
ID:
304152116

SRA Run Selector

10.

H3K9me3_ChIP-seq_Av

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data: BED
Sample
Accession:
GSM4152115
ID:
304152115

SRA Run Selector

11.

H3K4me3_ChIP-seq_Av

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data: BED
Sample
Accession:
GSM4152114
ID:
304152114

SRA Run Selector

12.

AvL1 input DNA

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data
Sample
Accession:
GSM4152113
ID:
304152113

SRA Run Selector

13.

H3K27me3_ChIP-seq_AvL1

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data: BED
Sample
Accession:
GSM4152112
ID:
304152112

SRA Run Selector

14.

H3K9me3_ChIP-seq_AvL1

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data: BED
Sample
Accession:
GSM4152111
ID:
304152111

SRA Run Selector

15.

H3K4me3_ChIP-seq_AvL1

Organism:
Adineta vaga
Source name:
whole animal
Platform:
GPL27727
Series:
GSE140049 GSE140052
Download data: BED
Sample
Accession:
GSM4152110
ID:
304152110

SRA Run Selector

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