GPL23532[Accession] - GEO DataSets - NCBI

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Select item 2000995171.

DRUID: A pipeline for reproducible transcriptome-wide measurements of mRNA stability

(Submitter supplied) We present DRUID (for Determination of Rates Using Intron Dynamics), a computational pipeline, for determining mRNA stability transcriptome-wide uses metabolic labeling and approach-to-equilibrium kinetics. Our pipeline uses endogenous introns to normalize time course data and yields more reproducible half-lives than other methods, even with datasets that were otherwise unusable. DRUID can handle datasets from a variety of organisms, spanning yeast to humans.

Organism:: Homo sapiens; Mus musculus; Saccharomyces cerevisiae; Caenorhabditis elegans; Drosophila melanogaster

Type:: Expression profiling by high throughput sequencing

4 related Platforms
66 Samples

Download data: CSV

Series

Accession:: GSE99517

ID:: 200099517

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000235322.

Illumina HiSeq 2500 (Homo sapiens; Saccharomyces cerevisiae)

Organism:: Saccharomyces cerevisiae; Homo sapiens

1 Series
26 Samples

Platform

Accession:: GPL23532

ID:: 100023532

Select item 3026454313.

Aman_2_24h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645431

ID:: 302645431

SRA Run Selector

Select item 3026454304.

Aman_2_12h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645430

ID:: 302645430

SRA Run Selector

Select item 3026454295.

Aman_2_8h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645429

ID:: 302645429

SRA Run Selector

Select item 3026454286.

Aman_2_4h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645428

ID:: 302645428

SRA Run Selector

Select item 3026454277.

Aman_2_2h_R1.fastq.gz

Organism:: Homo sapiens; Saccharomyces cerevisiae

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645427

ID:: 302645427

SRA Run Selector

Select item 3026454268.

Aman_2_1h_R1.fastq.gz

Organism:: Homo sapiens; Saccharomyces cerevisiae

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645426

ID:: 302645426

SRA Run Selector

Select item 3026454259.

Aman_1_24h_R1.fastq.gz

Organism:: Homo sapiens; Saccharomyces cerevisiae

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645425

ID:: 302645425

SRA Run Selector

Select item 30264542410.

Aman_1_12h_R1.fastq.gz

Organism:: Homo sapiens; Saccharomyces cerevisiae

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645424

ID:: 302645424

SRA Run Selector

Select item 30264542311.

Aman_1_8h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645423

ID:: 302645423

SRA Run Selector

Select item 30264542212.

Aman_1_4h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645422

ID:: 302645422

SRA Run Selector

Select item 30264542113.

Aman_1_2h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645421

ID:: 302645421

SRA Run Selector

Select item 30264542014.

Aman_1_1h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645420

ID:: 302645420

SRA Run Selector

Select item 30264541915.

ActD_2_24h_R1.fastq.gz

Organism:: Homo sapiens; Saccharomyces cerevisiae

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645419

ID:: 302645419

SRA Run Selector

Select item 30264541816.

ActD_2_12h_R1.fastq.gz

Organism:: Homo sapiens; Saccharomyces cerevisiae

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645418

ID:: 302645418

SRA Run Selector

Select item 30264541717.

ActD_2_8h_R1.fastq.gz

Organism:: Homo sapiens; Saccharomyces cerevisiae

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645417

ID:: 302645417

SRA Run Selector

Select item 30264541618.

ActD_2_4h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645416

ID:: 302645416

SRA Run Selector

Select item 30264541519.

ActD_2_2h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645415

ID:: 302645415

SRA Run Selector

Select item 30264541420.

ActD_2_1h_R1.fastq.gz

Organism:: Saccharomyces cerevisiae; Homo sapiens

Source name:: HEK293 cells

Platform:: GPL23532
Series:: GSE99517

Sample

Accession:: GSM2645414

ID:: 302645414

SRA Run Selector

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