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Items: 12

1.

Dual RNA-seq – sRNA profiling in various cell types

(Submitter supplied) Bacteria possess many small noncoding RNAs whose regulatory roles in pathogenesis are little understood due to a paucity of macroscopic phenotypes in standard virulence assays. Here, we use a novel Dual RNA-seq approach for a single-step simultaneous RNA profiling in both pathogen and host to reveal molecular phenotypes of sRNAs during infection with Salmonella Typhimurium. We identify a new PhoP/Q-activated small RNA which upon bacterial internalization acts to temporally control the expression of both, invasion-associated effectors and virulence genes required for intracellular survival. more...
Organism:
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Homo sapiens; Sus scrofa; Mus musculus
Type:
Expression profiling by high throughput sequencing
6 related Platforms
89 Samples
Download data: CSV
Series
Accession:
GSE67947
ID:
200067947

PubMed Similar studies SRA Run Selector

2.

Dual RNA-seq of diverse human, mouse and pig cell-types infected with various Salmonella strains

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Sus scrofa; Mus musculus
Type:
Expression profiling by high throughput sequencing
8 related Platforms
279 Samples
Download data
Series
Accession:
GSE60144
ID:
200060144

PubMed Similar studies

3.

Illumina MiSeq (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

Organism:
Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
2 Series
9 Samples
Download data
Platform
Accession:
GPL20063
ID:
100020063

4.

RAW264.7 WT 24 h replicate 1

Organism:
Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967324
ID:
301967324

SRA Run Selector

5.

RAW264.7 WT 04 h replicate 1

Organism:
Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967322
ID:
301967322

SRA Run Selector

6.

RAW264.7 WT 00 h replicate 1

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Mus musculus
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967320
ID:
301967320

SRA Run Selector

7.

MEF WT 20 h replicate 1

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Mus musculus
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967318
ID:
301967318

SRA Run Selector

8.

MEF WT 04 h replicate 1

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Mus musculus
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967316
ID:
301967316

SRA Run Selector

9.

MEF WT 00 h replicate 1

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Mus musculus
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967314
ID:
301967314

SRA Run Selector

10.

BMDM WT 06 h replicate 1

Organism:
Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967274
ID:
301967274

SRA Run Selector

11.

BMDM WT 02 h replicate 1

Organism:
Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967272
ID:
301967272

SRA Run Selector

12.

BMDM WT 00 h replicate 1

Organism:
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Mus musculus
Source name:
cell culture infection model
Platform:
GPL20063
Series:
GSE60144 GSE67947
Download data
Sample
Accession:
GSM1967270
ID:
301967270

SRA Run Selector

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