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Items: 1 to 20 of 91

1.

Ruler elements in chromatin remodelers set nucleosome array spacing and phasing

(Submitter supplied) Arrays of regularly spaced nucleosomes dominate chromatin and are often phased, i.e., aligned at reference sites like active promoters. How distances between nucleosomes and distances between phasing sites and nucleosomes are determined remained unclear, specifically, the role of ATP dependent chromatin remodelers in it. Here, we used a genome-wide reconstitution system to probe how yeast remodelers generate phased nucleosome arrays. more...
Organism:
Saccharomyces cerevisiae; Escherichia coli; Schizosaccharomyces pombe
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL22681 GPL20045 GPL18085
450 Samples
Download data: BED, BW, CSV, RDS, TAB, TXT
Series
Accession:
GSE140614
ID:
200140614
2.

Identification of Novel Regulatory Genes in APAP Induced Hepatocyte Toxicity by a Genome-Wide CRISPR-Cas9 Screen

(Submitter supplied) Acetaminophen (APAP) is a commonly used analgesic responsible for more than half of acute liver failure cases. Identification of previously unknown genetic risk factors would provide mechanistic insights and novel therapeutic targets for APAP-induced liver injury. This study used a genome-wide CRISPR-Cas9 screen to evaluate genes that are protective against, or cause susceptibility to, APAP-induced liver injury. more...
Organism:
Homo sapiens; Escherichia coli
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL18460 GPL20045
12 Samples
Download data: TXT
Series
Accession:
GSE112463
ID:
200112463
3.

Genome-wide maps of ParBF (SopB) binding along DNA in E. coli

(Submitter supplied) We report the genome-wide analysis from chromatin immunoprecipitated DNA (ChIP-sequencing) at very high resolution (about 50 millions reads) of the DNA binding pattern of ParBF (SopB) of plasmid F
Organism:
Escherichia coli
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL20045
2 Samples
Download data: TXT
Series
Accession:
GSE67869
ID:
200067869
4.

Illumina HiSeq 1500 (Escherichia coli)

Organism:
Escherichia coli
3 Series
87 Samples
Download data
Platform
Accession:
GPL20045
ID:
100020045
5.

Rep5_ec_Reb1-BamHI_none_80

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175654
ID:
304175654
6.

Rep5_ec_Reb1-BamHI_none_40

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175653
ID:
304175653
7.

Rep5_ec_Reb1-BamHI_none_20

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175652
ID:
304175652
8.

Rep5_ec_Reb1-BamHI_ISW2_80_refill

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175651
ID:
304175651
9.

Rep5_ec_Reb1-BamHI_ISW2_40

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175650
ID:
304175650
10.

Rep5_ec_Reb1-BamHI_ISW2_20

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175649
ID:
304175649
11.

Rep5_ec_Reb1-BamHI_ISW1a_80_refill

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175648
ID:
304175648
12.

Rep5_ec_Reb1-BamHI_ISW1a_80

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175647
ID:
304175647
13.

Rep5_ec_Reb1-BamHI_ISW1a_40

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175646
ID:
304175646
14.

Rep5_ec_Reb1-BamHI_ISW1a_20

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175645
ID:
304175645
15.

Rep5_ec_Reb1-BamHI_INO80_80_refill

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175644
ID:
304175644
16.

Rep5_ec_Reb1-BamHI_INO80_80

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175643
ID:
304175643
17.

Rep5_ec_Reb1-BamHI_INO80_40

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175642
ID:
304175642
18.

Rep5_ec_Reb1-BamHI_INO80_20

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175641
ID:
304175641
19.

Rep5_ec_Reb1-BamHI_Chd1_80_refill

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175640
ID:
304175640
20.

Rep5_ec_Reb1-BamHI_Chd1_80

Organism:
Escherichia coli
Source name:
in vitro reconstituted chromatin
Platform:
GPL20045
Series:
GSE140614
Download data: BW
Sample
Accession:
GSM4175639
ID:
304175639
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