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Items: 9

1.

Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes

(Submitter supplied) Dnmt1 epigenetically propagates symmetrical CG methylation in many eukaryotes. Their genomes are typically depleted of CG dinucleotides because of imperfect repair of deaminated methylcytosines. Here, we extensively survey diverse species lacking Dnmt1 and show that, surprisingly, symmetrical CG methylation is nonetheless frequently present and catalyzed by a different DNA methyltransferase family, Dnmt5. more...
Organism:
Bathycoccus prasinos; Cryptococcus neoformans var. grubii; Fragilariopsis cylindrus; Phaeodactylum tricornutum; Emiliania huxleyi; Micromonas pusilla; Aureococcus anophagefferens; Ostreococcus sp. 'lucimarinus'; Leishmania major; Thalassiosira pseudonana; Cyanidioschyzon merolae
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
12 related Platforms
26 Samples
Download data: GFF, GTF
Series
Accession:
GSE46692
ID:
200046692
2.

The Cryptococcus transcriptome at the site of human meningitis

(Submitter supplied) Cryptococcus neoformans is a major cause of fungal meningitis in immunocompromised individuals worldwide. Studies have categorized the transcriptome of Cryptococcus under various stresses, such as temperature, nitric oxide, iron, antifungal drugs and macrophages. However, an accurate and comprehensive transcriptome profiling of C. neoformans in the human host may allow an even better understanding of its survival and disease production. more...
Organism:
Cryptococcus neoformans var. grubii
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL17123 GPL17822
6 Samples
Download data: XLS
Series
Accession:
GSE51573
ID:
200051573
3.

Illumina HiSeq 2000 (Cryptococcus neoformans var. grubii)

Organism:
Cryptococcus neoformans var. grubii
2 Series
6 Samples
Download data
Platform
Accession:
GPL17123
ID:
100017123
4.

C. neoformans WT bisulfite sequencing

Organism:
Cryptococcus neoformans var. grubii
Source name:
Whole cells
Platform:
GPL17123
Series:
GSE46692
Download data: GFF
Sample
Accession:
GSM1134615
ID:
301134615
5.

C. neoformans WT47 RNA sequencing

Organism:
Cryptococcus neoformans var. grubii
Source name:
Whole cells
Platform:
GPL17123
Series:
GSE46692
Download data: GTF
Sample
Accession:
GSM1134614
ID:
301134614
6.

C. neoformans WT47 bisulfite sequencing

Organism:
Cryptococcus neoformans var. grubii
Source name:
Whole cells
Platform:
GPL17123
Series:
GSE46692
Download data: GFF
Sample
Accession:
GSM1134613
ID:
301134613
7.

C. neoformans dnmt5Δ bisulfite sequencing

Organism:
Cryptococcus neoformans var. grubii
Source name:
Whole cells
Platform:
GPL17123
Series:
GSE46692
Download data: GFF
Sample
Accession:
GSM1134612
ID:
301134612
8.

G0 ex vivo CSF

Organism:
Cryptococcus neoformans var. grubii
Source name:
yeast cells
Platform:
GPL17123
Series:
GSE51573
Download data
Sample
Accession:
GSM1248608
ID:
301248608
9.

HC1 ex vivo CSF

Organism:
Cryptococcus neoformans var. grubii
Source name:
yeast cells
Platform:
GPL17123
Series:
GSE51573
Download data
Sample
Accession:
GSM1248605
ID:
301248605
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Supplemental Content

db=gds|term=GPL17123[Accession]|query=1|qty=12|blobid=MCID_67a8a4d785cceb19952cc9cb|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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