nsv7097010
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:266
- Description:NC_000004.11:g.(?_980775)_(981040_?)del AND Mucopolysaccharidosis type 1
- Publication(s):Clarke et al. 2002
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 299 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 299 SVs from 40 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7097010 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 986,987 | 987,252 |
| nsv7097010 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 980,775 | 981,040 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv18787193 | deletion | Multiple | Multiple | Mucopolysaccharidosis Type I; Mucopolysaccharidosis type I | Pathogenic | ClinVar | RCV003122176.1, VCV002422581.3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18787193 | Remapped | Perfect | NC_000004.12:g.(?_ 986987)_(987252_?) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 986,987 | 987,252 |
| nssv18787193 | Submitted genomic | NC_000004.11:g.(?_ 980775)_(981040_?) del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 980,775 | 981,040 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv18787193 | GRCh37: NC_000004.11:g.(?_980775)_(981040_?)del | deletion | germline | Mucopolysaccharidosis Type I; Mucopolysaccharidosis type I | Pathogenic | ClinVar | RCV003122176.1, VCV002422581.3 |