Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4745059

Organism: Homo sapiens

Study:nstd199 (Quan et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:79

Publication(s):Quan et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 100 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):54,101,742-54,101,820

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4745059	Remapped	Perfect	GRCh38.p12	Primary Assembly	Second Pass	NC_000019.10	Chr19	54,101,742	54,101,820
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_9	Second Pass	NT_187693.1	Chr19\|NT_1 87693.1	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_8	Second Pass	NW_003571061.2	Chr19\|NW_0 03571061.2	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_6	Second Pass	NW_003571059.2	Chr19\|NW_0 03571059.2	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_4	Second Pass	NW_003571057.2	Chr19\|NW_0 03571057.2	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_7	Second Pass	NW_003571060.1	Chr19\|NW_0 03571060.1	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_5	Second Pass	NW_003571058.2	Chr19\|NW_0 03571058.2	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_3	Second Pass	NW_003571056.2	Chr19\|NW_0 03571056.2	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_2	First Pass	NW_003571055.2	Chr19\|NW_0 03571055.2	76,162	76,240
nsv4745059	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003571054.1	Chr19\|NW_0 03571054.1	76,162	76,240
nsv4745059	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	54,605,049	54,605,127

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16285929	deletion	Sequencing	Split read mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16285929	Remapped	Perfect	NT_187693.1:g.7616 2_76240del	GRCh38.p12	Second Pass	NT_187693.1	Chr19\|NT_1 87693.1	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571061.2:g.7 6162_76240del	GRCh38.p12	Second Pass	NW_003571061.2	Chr19\|NW_0 03571061.2	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571057.2:g.7 6162_76240del	GRCh38.p12	Second Pass	NW_003571057.2	Chr19\|NW_0 03571057.2	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571058.2:g.7 6162_76240del	GRCh38.p12	Second Pass	NW_003571058.2	Chr19\|NW_0 03571058.2	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571059.2:g.7 6162_76240del	GRCh38.p12	Second Pass	NW_003571059.2	Chr19\|NW_0 03571059.2	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571060.1:g.7 6162_76240del	GRCh38.p12	Second Pass	NW_003571060.1	Chr19\|NW_0 03571060.1	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571056.2:g.7 6162_76240del	GRCh38.p12	Second Pass	NW_003571056.2	Chr19\|NW_0 03571056.2	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571055.2:g.7 6162_76240del	GRCh38.p12	First Pass	NW_003571055.2	Chr19\|NW_0 03571055.2	76,162	76,240
nssv16285929	Remapped	Perfect	NW_003571054.1:g.7 6162_76240del	GRCh38.p12	Second Pass	NW_003571054.1	Chr19\|NW_0 03571054.1	76,162	76,240
nssv16285929	Remapped	Perfect	NC_000019.10:g.541 01742_54101820del	GRCh38.p12	Second Pass	NC_000019.10	Chr19	54,101,742	54,101,820
nssv16285929	Submitted genomic		NC_000019.9:g.5460 5049_54605127del	GRCh37 (hg19)		NC_000019.9	Chr19	54,605,049	54,605,127

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI