nsv3904662
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:15,028,019
- Description:GRCh37/hg19 13q31.3-33.3(chr13:94703767-109731879)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 38809 SVs from 123 studies. See in: genome view
Overlapping variant regions from other studies: 38815 SVs from 123 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3904662 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 94,051,513 | 109,079,531 |
| nsv3904662 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000013.10 | Chr13 | 94,703,767 | 109,731,879 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15154677 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000683570.1, VCV000564081.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15154677 | Remapped | Good | NC_000013.11:g.(?_ 94051513)_(1090795 31_?)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 94,051,513 | 109,079,531 |
| nssv15154677 | Submitted genomic | NC_000013.10:g.(?_ 94703767)_(1097318 79_?)del | GRCh37 (hg19) | NC_000013.10 | Chr13 | 94,703,767 | 109,731,879 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15154677 | GRCh37: NC_000013.10:g.(?_94703767)_(109731879_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV000683570.1, VCV000564081.1 | 1 |