nsv3889556
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:35,089
- Description:GRCh37/hg19 2q32.1(chr2:189119837-189154925)x3 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 334 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 334 SVs from 59 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3889556 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 188,255,110 | 188,290,198 |
| nsv3889556 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 189,119,837 | 189,154,925 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15162271 | copy number gain | Multiple | Multiple | not provided | Benign | ClinVar | RCV000740785.2, VCV000604149.2 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15162271 | Remapped | Perfect | NC_000002.12:g.(?_ 188255110)_(188290 198_?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 188,255,110 | 188,290,198 |
| nssv15162271 | Submitted genomic | NC_000002.11:g.(?_ 189119837)_(189154 925_?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 189,119,837 | 189,154,925 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15162271 | GRCh37: NC_000002.11:g.(?_189119837)_(189154925_?)dup | copy number gain | unknown | not provided | Benign | ClinVar | RCV000740785.2, VCV000604149.2 | 3 |