nsv3885408
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:8,621,457
- Description:GRCh37/hg19 1p36.32-36.21(chr1:4558588-13187457)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 28095 SVs from 139 studies. See in: genome view
Overlapping variant regions from other studies: 28357 SVs from 139 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3885408 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 4,498,528 | 13,119,984 |
| nsv3885408 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 4,558,588 | 13,187,457 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15148632 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000446359.3, VCV000395144.3 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15148632 | Remapped | Good | NC_000001.11:g.(?_ 4498528)_(13119984 _?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 4,498,528 | 13,119,984 |
| nssv15148632 | Submitted genomic | NC_000001.10:g.(?_ 4558588)_(13187457 _?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 4,558,588 | 13,187,457 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15148632 | GRCh37: NC_000001.10:g.(?_4558588)_(13187457_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000446359.3, VCV000395144.3 | 1 |