taxon

Name

datasets summary taxonomy taxon - Print a data report containing taxonomy metadata by taxon (NCBI Taxonomy ID, scientific or common name at any tax rank)

Synopsis

datasets summary taxonomy taxon [flags]

Description

Print a data report containing taxonomy metadata by taxon (NCBI Taxonomy ID, scientific or common name at any tax rank). The data report is returned in JSON format.

Examples

  datasets summary taxonomy taxon human
  datasets summary taxonomy taxon "mus musculus" "human" --report names
  datasets summary taxonomy taxon "human" --children
  datasets summary taxonomy taxon "mus musculus" "human" --parents --report names
  datasets summary taxonomy taxon 10116 --report ids_only

Options

      --api-key string     Specify an NCBI API key
      --as-json-lines      Output results in JSON Lines format
      --children           Return all taxonomic children of the requested taxon
      --debug              Emit debugging info
      --help               Print detailed help about a datasets command
      --inputfile string   Read a list of NCBI Taxons from a file to use as input
      --parents            Include all parents of the requested taxon
      --report string      Choose the output type:
                             * taxonomy:   Retrieve the primary taxonomy report
                             * names: Retrieve the taxonomy names report
                             * ids_only: Retrieve only the taxonomy identifiers
                              (default "taxonomy")
      --version            Print version of datasets