gene

Name

datasets download gene - Download a gene data package

Synopsis

datasets download gene [flags]

Description

Download a gene data package. Gene data packages include gene, transcript and protein sequences and one or more data reports. Data packages are downloaded as a zip archive.

The default gene data package for NM, NR, NP, XM, XR, XP and YP accessions:

• rna.fna (transcript sequences)
• protein.faa (protein sequences)
• data_report.jsonl (data report with gene metadata)
• dataset_catalog.json (a list of files and file types included in the data package)

Examples

  datasets download gene gene-id 672
  datasets download gene symbol brca1 --taxon "mus musculus"
  datasets download gene accession NP_000483.3
  datasets download gene gene-id 2778 --fasta-filter NC_000020.11,NM_001077490.3,NP_001070958.1

Options

      --api-key string             Specify an NCBI API key
      --debug                      Emit debugging info
      --fasta-filter strings       Limit protein and RNA sequence files to the specified RefSeq nucleotide and protein accessions
      --fasta-filter-file string   Limit protein and RNA sequence files to the specified RefSeq nucleotide and protein accessions included in the specified file
      --filename string            Specify a custom file name for the downloaded data package (default "ncbi_dataset.zip")
      --help                       Print detailed help about a datasets command
      --no-progressbar             Hide progress bar
      --preview                    Show information about the requested data package
      --version                    Print version of datasets

Commands