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NM_000051.4(ATM):c.7171G>A (p.Ala2391Thr) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 4, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002370688.10

Allele description [Variation Report for NM_000051.4(ATM):c.7171G>A (p.Ala2391Thr)]

NM_000051.4(ATM):c.7171G>A (p.Ala2391Thr)

Genes:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
C11orf65:chromosome 11 open reading frame 65 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.7171G>A (p.Ala2391Thr)
HGVS:
  • NC_000011.10:g.108329102G>A
  • NG_009830.1:g.111271G>A
  • NG_054724.1:g.145731C>T
  • NM_000051.4:c.7171G>AMANE SELECT
  • NM_001330368.2:c.641-20031C>T
  • NM_001351110.2:c.*38+6118C>T
  • NM_001351834.2:c.7171G>A
  • NP_000042.3:p.Ala2391Thr
  • NP_000042.3:p.Ala2391Thr
  • NP_001338763.1:p.Ala2391Thr
  • LRG_135t1:c.7171G>A
  • LRG_135:g.111271G>A
  • LRG_135p1:p.Ala2391Thr
  • NC_000011.9:g.108199829G>A
  • NM_000051.3:c.7171G>A
Protein change:
A2391T
Links:
dbSNP: rs2136415110
NCBI 1000 Genomes Browser:
rs2136415110
Molecular consequence:
  • NM_001330368.2:c.641-20031C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351110.2:c.*38+6118C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000051.4:c.7171G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351834.2:c.7171G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002662797Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Apr 4, 2023) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002662797.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.A2391T variant (also known as c.7171G>A), located in coding exon 48 of the ATM gene, results from a G to A substitution at nucleotide position 7171. The alanine at codon 2391 is replaced by threonine, an amino acid with similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 16, 2024