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NM_000527.5(LDLR):c.1470G>C (p.Trp490Cys) AND Hypercholesterolemia, familial, 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 3, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002227556.2

Allele description [Variation Report for NM_000527.5(LDLR):c.1470G>C (p.Trp490Cys)]

NM_000527.5(LDLR):c.1470G>C (p.Trp490Cys)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1470G>C (p.Trp490Cys)
HGVS:
  • NC_000019.10:g.11113646G>C
  • NG_009060.1:g.29266G>C
  • NM_000527.5:c.1470G>CMANE SELECT
  • NM_001195798.2:c.1470G>C
  • NM_001195799.2:c.1347G>C
  • NM_001195800.2:c.966G>C
  • NM_001195803.2:c.1089G>C
  • NP_000518.1:p.Trp490Cys
  • NP_001182727.1:p.Trp490Cys
  • NP_001182728.1:p.Trp449Cys
  • NP_001182729.1:p.Trp322Cys
  • NP_001182732.1:p.Trp363Cys
  • LRG_274t1:c.1470G>C
  • LRG_274:g.29266G>C
  • NC_000019.9:g.11224322G>C
  • NM_000527.4:c.1470G>C
Protein change:
W322C
Links:
dbSNP: rs879254915
NCBI 1000 Genomes Browser:
rs879254915
Molecular consequence:
  • NM_000527.5:c.1470G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1470G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.1347G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.966G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.1089G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002014619The Key Laboratory of Remodeling–Related Cardiovascular Diseases, Beijing Institute of Heart, Lung and Blood Vessel Diseases
no assertion criteria provided
Pathogenic
(Jun 3, 2020)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Asiangermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From The Key Laboratory of Remodeling–Related Cardiovascular Diseases, Beijing Institute of Heart, Lung and Blood Vessel Diseases, SCV002014619.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Asiannot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024