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NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp) AND Inborn genetic diseases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 23, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001266450.4

Allele description [Variation Report for NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp)]

NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp)

Gene:
KCNQ2:potassium voltage-gated channel subfamily Q member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.33
Genomic location:
Preferred name:
NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp)
Other names:
KCNQ2
HGVS:
  • NC_000020.11:g.63445322G>A
  • NG_009004.2:g.32319C>T
  • NM_004518.6:c.430C>T
  • NM_172106.3:c.430C>T
  • NM_172107.4:c.430C>TMANE SELECT
  • NM_172108.5:c.430C>T
  • NM_172109.3:c.430C>T
  • NP_004509.2:p.Arg144Trp
  • NP_742104.1:p.Arg144Trp
  • NP_742105.1:p.Arg144Trp
  • NP_742106.1:p.Arg144Trp
  • NP_742107.1:p.Arg144Trp
  • NC_000020.10:g.62076675G>A
  • NM_172107.2:c.430C>T
  • NM_172107.3:c.430C>T
Protein change:
R144W
Links:
Molecular consequence:
  • NM_004518.6:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172106.3:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172107.4:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172108.5:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172109.3:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
  • Moderate decrease in peak current [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0086]
  • Severe hyperpolarizing shift of voltage dependence of activation [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0031]
  • Severe slowing of activation [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0015]
Observations:
2

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001444625Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Pathogenic
(May 23, 2018)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Asiangermlineyes1not providednot provided1not providedclinical testing
Caucasian/Jewish (Ashkenazi)germlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains.

Geisheker MR, Heymann G, Wang T, Coe BP, Turner TN, Stessman HAF, Hoekzema K, Kvarnung M, Shaw M, Friend K, Liebelt J, Barnett C, Thompson EM, Haan E, Guo H, Anderlid BM, Nordgren A, Lindstrand A, Vandeweyer G, Alberti A, Avola E, Vinci M, et al.

Nat Neurosci. 2017 Aug;20(8):1043-1051. doi: 10.1038/nn.4589. Epub 2017 Jun 19.

PubMed [citation]
PMID:
28628100
PMCID:
PMC5539915

Spatial Clustering of de Novo Missense Mutations Identifies Candidate Neurodevelopmental Disorder-Associated Genes.

Lelieveld SH, Wiel L, Venselaar H, Pfundt R, Vriend G, Veltman JA, Brunner HG, Vissers LELM, Gilissen C.

Am J Hum Genet. 2017 Sep 7;101(3):478-484. doi: 10.1016/j.ajhg.2017.08.004. Epub 2017 Aug 31.

PubMed [citation]
PMID:
28867141
PMCID:
PMC5591029
See all PubMed Citations (3)

Details of each submission

From Ambry Genetics, SCV001444625.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Asian1not providednot providedclinical testing PubMed (3)
2Caucasian/Jewish (Ashkenazi)1not providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided
2germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024