NM_000384.3(APOB):c.13302C>T (p.Ser4434=) AND not provided

Germline classification:: Likely benign (3 submissions)
Last evaluated:: Oct 1, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001172130.27

Allele description [Variation Report for NM_000384.3(APOB):c.13302C>T (p.Ser4434=)]

NM_000384.3(APOB):c.13302C>T (p.Ser4434=)

Gene:

APOB:apolipoprotein B [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p24.1

Genomic location:

Preferred name:

NM_000384.3(APOB):c.13302C>T (p.Ser4434=)

HGVS:

NC_000002.12:g.21002120G>A
NG_011793.1:g.46954C>T
NM_000384.3:c.13302C>TMANE SELECT
NP_000375.3:p.Ser4434=
NC_000002.11:g.21224992G>A
NM_000384.2:c.13302C>T

Links:

dbSNP: rs144040999

NCBI 1000 Genomes Browser:

rs144040999

Molecular consequence:

NM_000384.3:c.13302C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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chromosome partitioning protein ParB [Pseudomonas sp. KBS0707]
chromosome partitioning protein ParB [Pseudomonas sp. KBS0707]
gi|1712810959|gnl|PRJNA539822|FFH21 35|gb|QDV98509.1|

Protein
Barnebydendron riedelii cytochrome oxidase subunit I (cox1) gene, partial cds; m...
Barnebydendron riedelii cytochrome oxidase subunit I (cox1) gene, partial cds; mitochondrial
gi|759083609|gb|KP058511.1|

Nucleotide
Barnebydendron riedelii voucher K:Lewis 1224 trnH-psbA intergenic spacer region,...
Barnebydendron riedelii voucher K:Lewis 1224 trnH-psbA intergenic spacer region, partial sequence; chloroplast
gi|1810958474|gb|MN992877.1|

Nucleotide
Barnebydendron riedelii voucher K:Lewis 1615 ribosomal protein L16 (rpL16) gene,...
Barnebydendron riedelii voucher K:Lewis 1615 ribosomal protein L16 (rpL16) gene, intron
gi|1389161836|gb|MG949400.1|

Nucleotide
Barnebydendron riedelii voucher No. 1953-35501, Brammall (K) tRNA-Lys (trnK) gen...
Barnebydendron riedelii voucher No. 1953-35501, Brammall (K) tRNA-Lys (trnK) gene, partial sequence; and maturase K (matK) gene, complete cds; chloroplast
gi|183528906|gb|EU361868.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001335087	CeGaT Center for Human Genetics Tuebingen	criteria provided, single submitter (CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)	Likely benign (Oct 1, 2021)	germline	clinical testing	Citation Link,
SCV001917892	Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Likely benign	germline	clinical testing
SCV001930030	Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Likely benign	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001335087

CeGaT Center for Human Genetics Tuebingen

criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)

Likely benign
(Oct 1, 2021)

germline

clinical testing

Citation Link,

SCV001917892

Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided

Likely benign

germline

clinical testing

SCV001930030

Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided

Likely benign

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	2	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV001335087.23

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	2	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		2	not provided	not provided	not provided

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001917892.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001930030.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 16, 2024

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