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NM_001360.3(DHCR7):c.1267G>A (p.Gly423Ser) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 29, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000485125.1

Allele description [Variation Report for NM_001360.3(DHCR7):c.1267G>A (p.Gly423Ser)]

NM_001360.3(DHCR7):c.1267G>A (p.Gly423Ser)

Gene:
DHCR7:7-dehydrocholesterol reductase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q13.4
Genomic location:
Preferred name:
NM_001360.3(DHCR7):c.1267G>A (p.Gly423Ser)
HGVS:
  • NC_000011.10:g.71435536C>T
  • NG_012655.2:g.17896G>A
  • NM_001163817.2:c.1267G>A
  • NM_001360.3:c.1267G>AMANE SELECT
  • NP_001157289.1:p.Gly423Ser
  • NP_001351.2:p.Gly423Ser
  • NP_001351.2:p.Gly423Ser
  • LRG_340t1:c.1267G>A
  • LRG_340:g.17896G>A
  • LRG_340p1:p.Gly423Ser
  • NC_000011.9:g.71146582C>T
  • NM_001360.2:c.1267G>A
Protein change:
G423S
Links:
dbSNP: rs902179640
NCBI 1000 Genomes Browser:
rs902179640
Molecular consequence:
  • NM_001163817.2:c.1267G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001360.3:c.1267G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000572562GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Dec 29, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000572562.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

A variant of uncertain significance has been identified in the DHCR7 gene. The G423S variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. The G423S variant is not observed large population cohorts (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server). The G423S variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. Additionally, this substitution occurs at a position that is conserved across species, and in silico analysis predicts this variant is probably damaging to the protein structure/function. Furthermore, missense variants in nearby residues (G424C, H426P) have been reported in the Human Gene Mutation Database in association with Smith-Lemli-Opitz syndrome (Stenson et al., 2014). Based on the currently available information, it is unclear whether this variant is a pathogenic variant or a rare benign variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 1, 2024