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NM_001244926.2(PRPF4):c.941C>T (p.Pro314Leu) AND Retinitis pigmentosa 70

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 1, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000132564.11

Allele description [Variation Report for NM_001244926.2(PRPF4):c.941C>T (p.Pro314Leu)]

NM_001244926.2(PRPF4):c.941C>T (p.Pro314Leu)

Gene:
PRPF4:pre-mRNA splicing tri-snRNP complex factor PRPF4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q32
Genomic location:
Preferred name:
NM_001244926.2(PRPF4):c.941C>T (p.Pro314Leu)
HGVS:
  • NC_000009.12:g.113288183C>T
  • NG_034225.1:g.17550C>T
  • NM_001244926.2:c.941C>TMANE SELECT
  • NM_001322266.2:c.215C>T
  • NM_001322267.2:c.215C>T
  • NM_004697.5:c.944C>T
  • NP_001231855.1:p.Pro314Leu
  • NP_001309195.1:p.Pro72Leu
  • NP_001309196.1:p.Pro72Leu
  • NP_004688.2:p.Pro315Leu
  • NP_004688.2:p.Pro315Leu
  • NP_004688.2:p.Pro315Leu
  • NC_000009.11:g.116050463C>T
  • NM_004697.4:c.944C>T
  • NR_136265.2:n.1030C>T
  • NR_136266.2:n.1027C>T
  • O43172:p.Pro315Leu
Protein change:
P314L; PRO315LEU
Links:
UniProtKB: O43172#VAR_071872; OMIM: 607795.0001; dbSNP: rs587777599
NCBI 1000 Genomes Browser:
rs587777599
Molecular consequence:
  • NM_001244926.2:c.941C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322266.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322267.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004697.5:c.944C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_136265.2:n.1030C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_136266.2:n.1027C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Retinitis pigmentosa 70 (RP70)
Identifiers:
MONDO: MONDO:0014400; MedGen: C4014681; Orphanet: 791; OMIM: 615922

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000187691OMIM
no assertion criteria provided
Pathogenic
(Jun 1, 2014)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

PRPF4 mutations cause autosomal dominant retinitis pigmentosa.

Chen X, Liu Y, Sheng X, Tam PO, Zhao K, Chen X, Rong W, Liu Y, Liu X, Pan X, Chen LJ, Zhao Q, Vollrath D, Pang CP, Zhao C.

Hum Mol Genet. 2014 Jun 1;23(11):2926-39. doi: 10.1093/hmg/ddu005. Epub 2014 Jan 12.

PubMed [citation]
PMID:
24419317

Details of each submission

From OMIM, SCV000187691.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In affected members of a 3-generation Chinese family with retinitis pigmentosa (RP70; 615922), Chen et al. (2014) identified heterozygosity for a c.944C-T transition in exon 10 of the PRPF4 gene, resulting in a pro315-to-leu (P315L) substitution at a highly conserved residue in the second blade of the 7 repeated blades of PRPF4. The mutation was not found in unaffected family members, in 400 unrelated controls, or in SNP databases. Quantitative PCR analysis of cultured patient fibroblasts showed 2.83-fold upregulation of PRPF4 expression compared to fibroblasts from an unaffected family member. Both the wildtype and mutant alleles were upregulated, indicating a compensatory response, and increased expression levels of other tri-snRNP components were also observed, including PRPF3 (607301), PRPF6 (613979), PRPF8 (607300), PRPF31 (606419), EFTUD2 (603892), and SART1 (605941). In addition, the non-snRNP factor SC35 (SRSF2; 600813) was markedly increased, displaying a diffuse pattern on confocal microscopy rather than the distinctly speckled pattern seen with wildtype. Overexpression of the P315L mutant in zebrafish triggered systemic deformities primarily affecting the retina, with disruption of photoreceptors and inner and outer segments, as well as decreased reactivity of rhodopsin (180380).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 16, 2024