2CX5,1WDV


Conserved Protein Domain Family
ProX_deacylase

?
cd04333: ProX_deacylase 
Click on image for an interactive view with Cn3D
This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Statistics
?
PSSM-Id: 239825
Aligned: 63 rows
Threshold Bit Score: 121.841
Created: 28-Jul-2006
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:putative deacylase active site [active site]
Evidence:
  • Comment:A mutation of the conserved lysine to arginine in Haemophilus influenzae YbaK abolishes activity.
  • Comment:A subgroup of Acinobacteria sequences lacks a highly conserved lysine residue (asparagine instead), a putative deacylase active site residue

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   #                                    
2CX5_A         7 ARRVQGALETRgfgHLKVVELPASTRtAKEAAQAVGAEVGQIVKSLVFVGek-gAYLFLVSGKNRLDLGKATRLVGgpLR 85  Thermus thermop...
NP_623390      5 VEAVRDFFRSRg--INLEVKIFEDTStVEKAAESLGVTPGEIAKSMLFKLkd-kYIMVVTAGDKRIDNKKFKETFKakAK 81  Thermoanaerobac...
NP_901581      3 LESVKAFFAARq-aDIAIIELDVSTAtVAEAASAHGVEPGRIAKTLAFRLndgrDVILVARGDARIDNRKFKDAFGk-GK 80  Chromobacterium...
ABA52548      54 VESVRQFLAEKa-pDIDVIALSESSS-TMTLSAAWDIKPAQIAKTLAMKVgd-aHVLLVSCGDSRLDNQKIKAALGgkAK 130 Burkholderia ps...
ABB14784       4 LTRVKDFLSKQn-pPVEVIVLNADTStAPLAAKALGVEVGAIAKTIVAVGks-kAVLVVAAGDVKLDFKKLKAVTGekMR 81  Carboxydothermu...
YP_519354      3 VEMVKEFFHSKe--MKVPILKFKDIStVAKAAESLGVTPGEIAKSLLLQVhd-dFVMVLMAGDKRLDNRKFKDTFKgkPK 79  Desulfitobacter...
YP_745538      5 LASVRAFLAAHa-pDIQILEMPDSTAtVAQAAAAFGVEPGQIAKTLAFLVgg-qTLILVARGDARLDNRKIRTRFGgkPR 82  Granulibacter b...
YP_754709      4 IERVRLYLSEKn-pELKIIVLEEDTStAPLAAQALGTEVGQIAKSILFKSngdkYCMIVAAGDVRMDNKALKQLLGsrPR 82  Syntrophomonas ...
YP_001111812   3 LNRVRNYVQKFd-vGLQPIEFSDSTStVEEAARVLGVEPGQIAKSILFRAke-hFGLFVTAGDVRVNLKKVKSLLGarPK 80  Desulfotomaculu...
YP_001396708   3 VENVVNYFLNRn-lENPVFKLPDSGAtVQQAAETIHTDPKYIAKTLAFKIkd-eDILIVMRGDLRVSNKKFKKIFKtkAK 80  Clostridium klu...
Feature 1                       ##                          #                          
2CX5_A        86 QATPEEVRELTGFAIGGVPPVGhntpLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTgAQVADL 155 Thermus thermophilus
NP_623390     82 MASPEEVLEVTGHPVGGVCPYGlknpVEVYYDISLKEYEIVYPAAGDVNAAVEVKVEDLDKIVeGEWVDV 151 Thermoanaerobacter tengco...
NP_901581     81 MLPPEEVEAITGHPVGGVCPFGlareLPIYLDVSIQAFDEVLPAAGAVHSAVRISPEALGDITaGQWVDV 150 Chromobacterium violaceum...
ABA52548     131 MLSAEETVAVTGHPVGGVCPFGlpapLPVYCDVMLKSYEFVVPAAGSTHAALRIDPVRLAELVeAEWVDV 200 Burkholderia pseudomallei...
ABB14784      82 LARAEEVEELTGFKPGGVCPFAlkkpLPILIDESLERFPVVYAAAGSPNSAVPITVSRLLEITgGQKCRV 151 Carboxydothermus hydrogen...
YP_519354     80 MPAVEQVLAMTGHPVGGVCPFGlsqeIPVYLDQSLKEYSVVYPAAGAPDAAVKLTVAELAELVaTDWVNV 149 Desulfitobacterium hafnie...
YP_745538     83 MLPLEDVEPVTGHPIGGVCPFGlsqsLPVYCDRSLLGFAEVLPAAGSPNSAVRIAPERLAILTnAEWVDV 152 Granulibacter bethesdensi...
YP_754709     83 MANAEEVLAVTGFNVGGVCPFAlpnpIPIFLDESLKRYDVVYAAAGTANTALPISYEELMRLTgGSPCRV 152 Syntrophomonas wolfei sub...
YP_001111812  81 MASAEEVEEVTGYRVGGVCPFAlkqdLPIYLDESMRRFDVVYTAAGTPRSALPITFEQLQAVTrGNVVNV 150 Desulfotomaculum reducens...
YP_001396708  81 MLNHDEVLENTGHPVGGLCPFGlkksLKVYIDISVENFPYVYPAAGSKEFALKINPQQIKELVdGQWIDV 150 Clostridium kluyveri DSM 555

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap