2W3E,1VHM,3IBJ,1MC0,3MF0,3MF0,1YKD,1YKD,2VEA


Conserved Protein Domain Family
GAF

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smart00065: GAF 
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Domain present in phytochromes and cGMP-specific phosphodiesterases.
Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Statistics
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PSSM-Id: 214500
Aligned: 99 rows
Threshold Bit Score: 45.8352
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2W3E_A         6 DLEATLRAIVHSATS----LVDARYGAMEVHDR----------QHRVLHFVYEGIDEEtv----rrIGHLPKGL---GVI 64   Mycobacterium ...
ZP_08375000   33 DLASLCEALSQLVKR----SALADNAAIVLWQA-----------QTQRASYYASREKDtpi---kyEDETVLAH---GPV 91   Escherichia co...
NP_440351    118 gLQELIEVIRAEIRQ----VISVDEIFLYLYDQ----------SQDSLTPLLY----Kte----esLQNFKAIE---KIV 172  Synechocystis ...
AEJ57707     169 DLDDLIADVAREIHH----FFGLASVSMVLGDHr--------kNEKFSLWCSDLSASHca----clPRCMPGES---VLL 229  Escherichia co...
NP_442598    457 TVKDACGVIAALAQP----LFPDCCGGIFILSA-----------QNNCLERVTFWG-----------NPFCSDDvftPLD 510  Synechocystis ...
AAA23770     199 DMDELVSELAKEIHY----YFDIDDISIVLRSHr--------kNKLNIYSTHYLDKQHpa-----hEQSEVDEAg--TLT 259  Escherichia coli
NP_441080    658 VVADACASLAALAPP----LFPNIAGTISIFDSt---------ANYFEQVKTWGNL-----------ACSEPLFn--GTD 711  Synechocystis ...
NP_441819    867 DVGVAVGQFSLIWFG----LIDPDRQTIIPYMA------------GGHTTAYLENi----------RITFKDEPagrGPT 920  Synechocystis ...
NP_484786    162 CAAASIEEIFFQVQQvvfrYLGSIDRLALLIDV----------NGCGHLELVNAGTRSktqqqyllADASWISR---SIC 228  Nostoc sp. PCC...
NP_489003    335 RSSLNPEDIFAAITQklgqALQVDGCVLSLWTEedefvkcvglYDSSRHSEDSLDNHRlitqelpeSQAPILEN---PIL 411  Nostoc sp. PCC...
2W3E_A        65 GLLIEDPKPLRLDDVSAHP--AS-IGFPPY-HPp---MRTFLGVPVRVR--DESFGTLYLTDK---TNGQPFSDDDEVLV 132  Mycobacterium ...
ZP_08375000   92 RSILSRPDTLHCSYEEFCE--TWpQLAAGGlYPk---FGHYCLMPLAAE--GHIFGGCEFIRY---DD-RPWSEKEFNRL 160  Escherichia co...
NP_440351    173 ERVLKLNQVEVIDDIQNDQ--DYlNQP-----Sk---IRSLLCYSLTVQ--NSIIGVLGLAH----YQVKHFDSSDLNLF 236  Synechocystis ...
AEJ57707     230 TQTLQTRQPTLTHRADDLF--LWqRDPLLL-LLasngCESALLIPLTFG--NHTPGALLLAHT----SSTLFSEENCQLL 300  Escherichia co...
NP_442598    511 CWALRRGRSHGVKQGQHAL---FcNHVNDQ-HL----PLASLCIPLIAQ--GETLGLLFLCTF----KGEILPDIRQQLA 576  Synechocystis ...
AAA23770     260 ERVFKSKEMLLINLHERDDl----ALRMSS-TPg---ATDSNLVPVTADvwRHHAGRAETGAM----RRESVYHYQSEFT 327  Escherichia coli
NP_441080    712 CWALRLGQPHLVGVQQHDL---LcSHLNPE-CL----PQESLCIPLIAQ--GETLGLLNLCSD----RAGVISSDQQQLA 777  Synechocystis ...
NP_441819    921 GTAAREGRLVICSNISQDPkmAPwRGSAMR-YG----FLSSAAVPIRQG--GQVVAVLTFYSQ----EAGFFSEDEQDLL 989  Synechocystis ...
NP_484786    229 QKVFEEKIVIQTADTHKDE--RFsSEHSIL-LKg---IRSAMAVPLWDE--NKVVGVLYADAHlssYHWERDGEEELSFF 300  Nostoc sp. PCC...
NP_489003    412 QEILKTHEPVIITDMNHSD--WEtKRFDLH-LKm--pARSLMVVPLLAD--GKCIGSITLREG---KRARQWLSADIELA 481  Nostoc sp. PCC...
2W3E_A       133 QALAAAAGIAVANARLYQQAK 153  Mycobacterium tuberculosis
ZP_08375000  161 QTFTQIVSVVTEQIQsrvvnn 181  Escherichia coli TA280
NP_440351    237 STLTGQVAAAIRTAQYYETIK 257  Synechocystis sp. PCC 6803
AEJ57707     301 QHIADRIAIAVGNADAWRSMT 321  Escherichia coli UMNF18
NP_442598    577 KTVAEQLALAIANLKLREQLE 597  Synechocystis sp. PCC 6803
AAA23770     328 RQIAERVAIAVDNALAYQEIH 348  Escherichia coli
NP_441080    778 KAVAEQVSLAIANIKLRERLE 798  Synechocystis sp. PCC 6803
NP_441819    990 QEISDNLSFALDAIQLDQANQ 1010 Synechocystis sp. PCC 6803
NP_484786    301 SALANLVASSVQRWLLAEKLK 321  Nostoc sp. PCC 7120
NP_489003    482 KAVAAQAAIAVQQSHLYQKTR 502  Nostoc sp. PCC 7120
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