1CA9,1D01,1F3V,1QSC


Conserved Protein Domain Family
MATH_TRAF2

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cd03778: MATH_TRAF2 
Click on image for an interactive view with Cn3D
Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors.
Statistics
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PSSM-Id: 239747
Aligned: 5 rows
Threshold Bit Score: 343.137
Created: 18-May-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:TNFR binding site
Evidence:
  • Comment:TNFR = Tumor Necrosis Factor Receptor
  • Comment:Based on the binding of TRAF2 to peptides of TNFR-2, CD30 and CD40, members of the TNFR superfamily.
  • Structure:1CA9_A; Human TRAF2 binds TNFR-2 peptide; contacts calculated at 3.5A
  • Structure:1QSC_C; Human TRAF2 binds CD40 peptide; contacts calculated at 3.5A
  • Structure:1D01_F; Human TRAF2 binds CD30 peptide; contacts calculated at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                # #   #          #   
1CA9_A     25 AMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVV 104 human
1D01_F      1 AMADLEQKVLEMEASTYDGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVV 80  human
1F3V_B      4 AXADLEQKVLEXEASTYDGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLFFVV 83  human
1QSC_C     24 AXADLEQKVLEXEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLFFVV 103 human
XP_683631 318 QLAESEQSLRELQFCTYDGVFIWKIAEFSRRRQDAVAGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVV 397 zebrafish
Feature 1                                      ##    # ##         ###                         
1CA9_A    105 MKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIK 184 human
1D01_F     81 MKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIK 160 human
1F3V_B     84 XKGPNDALLRWPFNQKVTLXLLDQNNREHVIDAFRPDVTSSSFQRPVNDXNIASGCPLFCPVSKXEAKNSYVRDDAIFIK 163 human
1QSC_C    104 XKGPNDALLRWPFNQKVTLXLLDQNNREHVIDAFRPDVTSSSFQRPVNDXNIASGCPLFCPVSKXEAKNSYVRDDAIFIK 183 human
XP_683631 398 MKGKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIK 477 zebrafish
Feature 1         
1CA9_A    185 AIVD 188 human
1D01_F    161 AIVD 164 human
1F3V_B    164 AIVD 167 human
1QSC_C    184 AIVD 187 human
XP_683631 478 AIVD 481 zebrafish

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