2DRE,6S2Z,5HPZ,6GIW


Conserved Protein Domain Family
beta-trefoil_STI_WSCP_II

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cd23360: beta-trefoil_STI_WSCP_II 
soybean trypsin inhibitor (STI)-like domain, beta-trefoil fold, found in class II water-soluble chlorophyll proteins (WSCPs) and similar proteins
There are two kinds of water-soluble chlorophyll (Chl) proteins (WSCPs): Chenopodium-type (Class I, a WSCP from Chenopodium, Atriplex, Polygonum, and Amaranthus species) and Brassica-type (Class II, a WSCP from Brassica, Raphanus, and Lepidium species). Classes I and II WSCPs differ mainly in their photoconvertiblity. Class I WSCPs show a light-induced absorption change, whereas Class II WSCPs do not. This family includes Class II WSCPs. They possess the complete motif of the Kunitz-type proteinase inhibitor but may not inhibit trypsin, whose activity is inhibited strongly by one Kunitz-proteinase inhibitor, the soybean trypsin inhibitor (STI). Members of this subfamily contain a STI-like domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.
Statistics
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PSSM-Id: 467385
Aligned: 13 rows
Threshold Bit Score: 243.897
Created: 10-May-2021
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
chlorophyll
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:chlorophyll binding site [chemical binding site]
Evidence:
  • Structure:2DRE; Lepidium virginicum water-soluble chlorophyll protein tetramer binds chlorophyll A, contacts at 4A
  • Structure:5HPZ; Brassicaceae water-soluble chlorophyll binding protein binds chlorophyll, contacts at 4A
  • Structure:6S2Z; Brassica oleracea water-soluble chlorophyll protein binds chlorophyll-b, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        #### ##      #    ###  #  #                     
2DRE_A         5 EPVKDTNGNPLKIETRYFIQPASd--nNGGGLVPANVDLs-HLCPLGIVRTSLPyQPGLPVTISTPsss---egNDVLTN 78  Lepidium virgin...
6S2Z_A         2 EQVKDSNGNPVKRGAKYFIQPAKs---NGGGLVPAAINIl-PFCPLGITQTLLPyQPGLPVSFGYEpvi--vgtDYIYTS 75  Brassica olerac...
5HPZ_A         2 EQVKDSNGNPVKRGAKYFIQPAKs---NGGGLVPAAINIl-PFCPLGITQTLLPyQPGLPVSFGYEpvi--agtDYIYTS 75  mustard family
6GIW_A         5 EPVKDTNGNPLKIETRYFIQPASd--nNGGGLVPANVDLs-HLCPLGIVRTSLPyQPGLPVTISTPsss---egNDVLTN 78  Lepidium virgin...
BAA19578      31 EPVKDTNGNPLKIETRYFIQPASd--nNGGGLVPANVDLs-HLCPLGIVRTSLPyQPGLPVTISTPsss---egNDVLTN 104 Lepidium virgin...
XP_010539167  26 DAVSDTNGEPLRPGAEYFIVPDSg--gNFGGLVPQSRDVf-HICTLDVVQTLLPfQPGLPVSFVLSe-------ETVRLS 95  Tarenaya hassle...
Q9C7S6        25 EPVKDTAGNPLNTREQYFIQPVKteskNGGGLVPAAITVl-PFCPLGITQTLLPyQPGLPVSFVLAlg----vgSTVMTS 99  thale cress
ACV83939      30 EVVKDTAGNAVQTYEQYFIQPVKs---NGGGLIPLPVKV--PLCPLGINQVLRRdVPGLPVSFGNPyrp--svvHNVYTT 102 Isatis tinctoria
VDD22855      12 EHVLDTAENPVLTTAQYLILPYSpr-sNGGGLLPVPVKLl-PLCPLGISQSSVTaLPGLPVGFSYPypl---mdTYVNEG 86  wild cabbage
VVB02657      40 EIVKDSAGNSVKVGQRYLIQPVKtpsnNGGGLAPAPISI--PFCPLGISQISLPdQPGLPVSFIRLddqsqsqdNFVRTS 117 Arabis nemorensis
NP_177373     25 EPVKDTAGNPLNTREQYFIQPVKteskNGGGLVPAAITVl-PFCPLGITQTLLPyQPGLPVSFVLAlg----vgSTVMTS 99  thale cress
EOA35681      25 EPVKDTAGNSLQPGKQYFIQPVQtgryEGGGLVPSGIATfpTFCPLGITETRRRfEPGLPVSFASPlg----vvEFVTTS 100 Capsella rubella
VDC88475      21 EPVKDTAGNSLETGQQYFIQPIKtgskNGGGLVPAAIRLi-PLCPLGINQAAFTfLPGLPVSFEFSdsv---tePIVKTS 96  field mustard
Feature 1                #    ###                                                                
2DRE_A        79 TNIAITFDAp---IWL-Cp-sSKTWTVDSSSe---EKYIITGGDpksgESFFRIEKYgn--gkNTYKLVRYdng--egKS 146 Lepidium virgin...
6S2Z_A        76 TTINIEFRSe---IWPvCnelSKLWAVDVSSsaakEPAIIIGGErtapNSLFKIEEAtg---aHTYKLTTSs------GT 143 Brassica olerac...
5HPZ_A        76 TTINIEFRSe---IWPvCnelSKLWAVDVSSsaakEPAIIIGGErtapNSLFKIEEAtg---aHTYKLTTSs------GT 143 mustard family
6GIW_A        79 TNIAITFDAp---IWP-Cp-sSKTWTVDSSSe---EKYIITGGDpksgESFFRIEKYgn--gkNTYKLVRYdng--egKS 146 Lepidium virgin...
BAA19578     105 TNIAITFDAp---IWL-Cp-sSKTWTVDSSSe---EKYIITGGDpksgESFFRIEKYgn--gkNTYKLVRYdng--egKS 172 Lepidium virgin...
XP_010539167  96 TDISIQFESp---IWI-Cr-sSKVWKVDYSTs---EDLITTDGKtgseESLFRIEKLes---gNDYKLVHLdsrsskiRN 164 Tarenaya hassle...
Q9C7S6       100 SAVNIEFKSn---IWPfCkefSKFWEVDDSSsapkEPSILIGGKmgdrNSSFKIEKAgegaraNVYKLTTFy------GT 170 thale cress
ACV83939     103 EFVNIELKPssdnDWPvCkgfSNLWTVDGHSsasdEPPILVGGKp--gHSYFKIERDehfvggNVYKLSTIf-----dGI 175 Isatis tinctoria
VDD22855      87 QAVNIEFRSe---AWPgCeefSKYWEVDESSsaleEPAILTGGKkrerNSWFRIEREekfvggNAYKLTTLa------GT 157 wild cabbage
VVB02657     118 TDYMIVFDSd---IGLvCndfSKLWAVEMSDv--kEPPIIIGGKyrarTARFFVEKAeg---aNTYKLSSTv-----fGN 184 Arabis nemorensis
NP_177373    100 SAVNIEFKSn---IWPfCkefSKFWEVDDSSsapkEPSILIGGKmgdrNSSFKIEKAgegaraNVYKLTTFy------GT 170 thale cress
EOA35681     101 SIVNIEFHSd---DWPvCkeySKLWKVDDSSsvpnMQAITIGGTqlaqNSQFKIEKAgt--eaNTYKFTSVtg----aGT 171 Capsella rubella
VDC88475      97 TDVTIEFKSs--vPSPvCkeySFIWAVESSSds-nEPAIILGGTpgsqNSRFKIEKAgegageNTYKLTSLg------GT 167 field mustard
Feature 1               #                           
2DRE_A       147 VGSTKSLWg--PALVLNDDddsdenAFPIKFREVD 179 Lepidium virginicum
6S2Z_A       144 VGTIPGPWlgaPQLIATNDda---kTLFVKFVKVD 175 Brassica oleracea var. botrytis
5HPZ_A       144 VGTIPGPWlgaPQLIATNDda---kTLFVKFVKVD 175 mustard family
6GIW_A       147 VGSTKSLWg--PALVLNDDddsdenAFPIKFREVD 179 Lepidium virginicum
BAA19578     173 VGSTKSLWg--PALVLNDDddsdenAFPIKFREVD 205 Lepidium virginicum
XP_010539167 165 VGLIMGEFg-iPRLALTDE------ALSVKFRPVK 192 Tarenaya hassleriana
Q9C7S6       171 VGAIPGVWlsaPQLIITKDta---kTLLVKFKKVD 202 thale cress
ACV83939     176 IGTVQGPLlglPQLVLTNDta---kTLLVKFIKVE 207 Isatis tinctoria
VDD22855     158 IGTVPGPWenaPQLVLTNDta---kTFLVKFHKVH 189 wild cabbage
VVB02657     185 IGTKPGGLfdaPQLVVTNDna---kRLLFKLSTTT 216 Arabis nemorensis
NP_177373    171 VGAIPGVWlsaPQLIITKDta---kTLLVKFKKVD 202 thale cress
EOA35681     172 VGFTPQGFlqaPQIVLTNDna---kTLVVKFKKVD 203 Capsella rubella
VDC88475     168 VGNVTGIFl-aPQLVLTNDna---kTTFVKFNKYN 198 field mustard

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