2DJA


Conserved Protein Domain Family
Bbox2_MID2_C-I

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cd19823: Bbox2_MID2_C-I 
B-box-type 2 zinc finger found in midline-2 (MID2) and similar proteins
MID2, also known as midin-2, midline defect 2, RING finger protein 60 (RNF60), or tripartite motif-containing protein 1 (TRIM1), is a probable E3 ubiquitin-protein ligase that is highly related to MID1 that associate with cytoplasmic microtubules along their length and throughout the cell cycle. Like MID1, MID2 associates with the microtubule network and may at least partially compensate for the loss of MID1. Both MID1 and MID2 interacts with Alpha 4, which is a regulatory subunit of PP2-type phosphatases, such as PP2A, and an integral component of the rapamycin-sensitive signaling pathway. MID2 can also substitute for MID1 to control exocytosis of lytic granules in cytotoxic T cells. It heterodimerizes in vitro with its paralog MID1. Loss-of-function mutations in MID2 lead to the human X-linked intellectual disability (XLID). MID2 belongs to the C-I subclass of TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a RING finger, Bbox1 and Bbox2, and a coiled coil region, as well as a COS (carboxy-terminal subgroup one signature) box, a fibronectin type III (FN3) domain, and a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif.
Statistics
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PSSM-Id: 380881
Aligned: 7 rows
Threshold Bit Score: 84.6409
Created: 4-Sep-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C H C D C C H HClick to see conserved feature residue pattern help
Evidence:
  • Structure:2DJA; Homo sapiens Midline-2 binds two Zn2+ ions through its B-box motif.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #        #  #    #  #     #  #     
2DJA_A        19 ITCLDHENEKVNMYCVsDDQLICALCKLVGRHRDHQVASL 58  human
XP_009289352 184 LACLEHENEKVNMYCVvDDQLICALCKLVGRHREHQVTSL 223 zebrafish
XP_004940642 175 LTCLEHENEKVNMYCVaDDQLICALCKLVGRHRDHQVASL 214 chicken
NP_001177813 173 LACLEHENEKVNMYCTtDDQLICALCKLVGRHREHQVASL 212 African clawed frog
Q9UJV3       193 ITCLDHENEKVNMYCVsDDQLICALCKLVGRHRDHQVASL 232 human
XP_007889177 173 LMCLEHENEKVNMYCVtDDQLICALCKLVGRHREHQVSSL 212 elephant shark
XP_006000157 174 LTCLEHENEKVNMYCLvDDQLICALCKLVGKHRDHQVSSL 213 coelacanth

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