2DH8


Conserved Protein Domain Family
RRM1_DAZAP1

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cd12574: RRM1_DAZAP1 
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RNA recognition motif 1 (RRM1) found in Deleted in azoospermia-associated protein 1 (DAZAP1) and similar proteins
This subfamily corresponds to the RRM1 of DAZAP1 or DAZ-associated protein 1, also termed proline-rich RNA binding protein (Prrp), a multi-functional ubiquitous RNA-binding protein expressed most abundantly in the testis and essential for normal cell growth, development, and spermatogenesis. DAZAP1 is a shuttling protein whose acetylated form is predominantly nuclear and the nonacetylated form is in cytoplasm. It also functions as a translational regulator that activates translation in an mRNA-specific manner. DAZAP1 was initially identified as a binding partner of Deleted in Azoospermia (DAZ). It also interacts with numerous hnRNPs, including hnRNP U, hnRNP U like-1, hnRNPA1, hnRNPA/B, and hnRNP D, suggesting DAZAP1 might associate and cooperate with hnRNP particles to regulate adenylate-uridylate-rich elements (AU-rich element or ARE)-containing mRNAs. DAZAP1 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal proline-rich domain.
Statistics
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PSSM-Id: 409988
Aligned: 6 rows
Threshold Bit Score: 170.217
Created: 20-Sep-2011
Updated: 17-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DH8_A        18 KLFVGGLDWStTQETLRSYFSQYGEVVDCVIMKDKTTNqsRGFGFVKFKDPNCVGTVLASrPHTLDGRNIDPKPCTPRGM 97  human
NP_001026599  12 KLFVGGLDWStTQETLRSYFSQYGEVVDCVIMKDKTTNqsRGFGFVKFKDPNCVGTVLASrPHTLDGRNIDPKPCTPRGM 91  chicken
Q98SJ2        11 KLFVGGLDWStTQETLRSYFSQYGEVVDCVIMKDKTTNqsRGFGFVKFKDPNCVGTVLASrPHTLDGRNIDPKPCTPRGM 90  African clawed ...
NP_001166975  24 KLFVGGLDWStTQETLRNYFSQYGEVVDCVIMKDKSTNqsRGFGFVKFKDPNCVRTVLDTkPHNLDGRNIDPKPCTPRGM 103 zebrafish
XP_005999925  11 KLFVGGLDWStTQETLRSYFSQYGEVVDCVIMKDKTTNqsRGFGFVKFKDPNCVGTVLACkSHNLDGRNIDPKPCTPRGM 90  coelacanth
XP_007896923  11 KLFVGGLDWNtSQETLRDYFSQYGEVVDCVIMKDKMTNqsRGFGFVKFKDPNCVGTVLSSrPHNLDGRTIDPKPCTPRSM 90  elephant shark
2DH8_A        98 QP 99  human
NP_001026599  92 QP 93  chicken
Q98SJ2        91 QP 92  African clawed frog
NP_001166975 104 QP 105 zebrafish
XP_005999925  91 QP 92  coelacanth
XP_007896923  91 QQ 92  elephant shark
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