1X4B,5HO4,5EN1


Conserved Protein Domain Family
RRM1_hnRNPA2B1

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cd12762: RRM1_hnRNPA2B1 
Click on image for an interactive view with Cn3D
RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP A2/B1) and similar proteins
This subgroup corresponds to the RRM1 of hnRNP A2/B1 which is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A2/B1 also functions as a splicing factor that regulates alternative splicing of the tumor suppressors, such as BIN1, WWOX, the antiapoptotic proteins c-FLIP and caspase-9B, the insulin receptor (IR), and the RON proto-oncogene among others. Moreover, the overexpression of hnRNP A2/B1 has been described in many cancers. It functions as a nuclear matrix protein involving in RNA synthesis and the regulation of cellular migration through alternatively splicing pre-mRNA. It may play a role in tumor cell differentiation. hnRNP A2/B1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus.
Statistics
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PSSM-Id: 410155
Aligned: 7 rows
Threshold Bit Score: 166.761
Created: 20-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on similarity to the sequence of Homo sapiens hnRNP A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # # ##                     # # #        ### #                      #  # #####
1X4B_A        26 QFRKLFIGGLSfetTEESLRNYYEQWGKLTDCVVMRDPaskrsRGFGFVTFSSMAEVDAAMAArpHSIDGRVVEPKRAVA 105 human
NP_001026156  15 QFRKLFIGGLSfetTEESLRNYYEQWGKLTDCVVMRDPaskrsRGFGFVTFSSMAEVDAAMAArpHTIDGRVVEPKRAVA 94  chicken
P51989         7 QFRKLFIGGLSfetTEESLRNYYEQWGTLTDCVVMRDPaskrsRGFGFVTFSCMNEVDAAMATrpHTIDGRVVEPKRAVA 86  African clawed ...
P51990         7 QFRKLFIGGLSfetTEESLRNFYEQWGQLTDCVVMRDPaskrsRGFGFVTFSCMNEVDAAMSArpHTIDGRVVEPKRAVA 86  African clawed ...
5HO4_A         5 QFRKLFIGGLSfetTEESLRNYYEQWGKLTDCVVMRDPaskrsRGFGFVTFSSMAEVDAAMAArpHSIDGRVVEPKRAVA 84  human
5EN1_A         8 QFRKLFIGGLSfetTEESLRNYYEQWGKLTDCVVMRDPaskrsRGFGFVTFSSMAEVDAAMAArpHSIDGRVVEPKRAVA 87  human
XP_014342189   7 QFRKLFIGGLSfetTEESLHKYYEQWGKLTDCVVMRDSvtnrsRGFGFVTFSSMAEVDAAMHArpHSIDGRVVEPKRAVA 86  coelacanth
Feature 1        #
1X4B_A       106 R 106 human
NP_001026156  95 R 95  chicken
P51989        87 R 87  African clawed frog
P51990        87 R 87  African clawed frog
5HO4_A        85 R 85  human
5EN1_A        88 R 88  human
XP_014342189  87 R 87  coelacanth

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