1WXU


Conserved Protein Domain Family
SH3_PEX13_eumet

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cd11864: SH3_PEX13_eumet 
Click on image for an interactive view with Cn3D
Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13
PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212798
Aligned: 22 rows
Threshold Bit Score: 75.7443
Created: 2-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #   #                         ##              # ##   
1WXU_A        19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQP----KVRGWLLASLDg-QTTGLIPANYVKI 76  house mouse
AEO36403     291 AAVAQYDFRAEGPNELALTAGQELRIAPRELQP----RVRGWLLASVDg-SRVGLVPANYVKV 348 Amblyomma maculatum
ADD18542     277 ETSALYDFQSRNSNELTIHAGQRLTIAPKEIQNtlglLNTGWALATTDg-QSVGIIPINYVKS 338 Glossina morsitans morsitans
XP_003385998 220 IARALYDFNAERQNELSVAAGDELVIAPASLQP----QATGWILVGRN--RRSGLIPSNYIEI 276 Amphimedon queenslandica
XP_001649113 271 EAVAIYNFDASSANELTIRAGQPVLIAPKSVQVeqnlLNTGWVLASVDn-TVSGLIPVNYVQG 332 yellow fever mosquito
XP_002432090 237 LGIGMYDFYAASNQELSISSQQKLMIAPKKFQPt---DCPGWILACNEn-SKIGLVPSNYIGI 295 human body louse
EGI63217     272 VATAMYDFMAVSNEELSLRTGQKIWLAPRSLQSk---SIPGWWIATDN--RNVGLVPANYVTI 329 Panamanian leafcutter ant
XP_003138097 222 EAQATEDHDAEANDKISFKCGDILRVAPREYQP----RKLGYILACSIdgKKIGLVPIKKVRL 280 Loa loa
EFN89103     250 VAHVLYDFVSVSNDELNLKAGQKIWLAPQSLQSk---NATGWLIATNG--KDIGLVPTNYIQI 307 Harpegnathos saltator
AAL28312     137 QTQAVYEFVARSPSELSLRAGQMLHVAPRDIQQtlnlLNTGWALATTNg-QTSGIIPISYVKS 198 fruit fly

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