1XDW


Conserved Protein Domain Family
HGDH_like

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cd12184: HGDH_like 
Click on image for an interactive view with Cn3D
(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.
Statistics
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PSSM-Id: 240660
Aligned: 17 rows
Threshold Bit Score: 525.705
Created: 31-Oct-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:putative NAD binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1XDW_A      1 MKVLCYGVRDVELPIFEACNKe--FGYDIKCVPDYLNtkETAEMAAGFDAVILRGNCfANKQNLDIYKK-LGVKYILTRT 77  Acidaminococcus fe...
AAL94683    1 MKVLFYGVREVEIPLFHELNKkegFGYELELIPDYLNskETAEKAKGFECVVLRGNCfATKEVLDMYKE-YGVKYLLTRT 79  Fusobacterium nucl...
EEW92998    1 MKVLAYGVRDVEKPIFEAVNAk--FGYELVTTPEYLNsaETARLAEGCQAVILRGNCwANKENLDIYKE-LGVKYVITRT 77  Granulicatella ele...
EEV19363    1 MKIIFYGVRDVERPIFEAVNKk--FGYEMTLIPEYLTdeATARKAAGHDVVVLRGNCfATKERLDIYKE-LGVKYVMTRT 77  Treponema vincenti...
EFK32800    1 MRIACYGVRPLERSYFEKLNK---YDYDLKLIPEYLNr-ENVVQAEDCDAVLVRGNClCDRTNLEQFKN-YGISWVFTRS 75  Lactobacillus delb...
CBL90977    2 FRITAYGVRKNEIDYFKKLNI---FDYELNLVTDNLKk-SNIITAKGSDGVLLRANNdGSEPILRQLRA-WGIKYVFTRT 76  Leuconostoc gasico...
EEU30875    1 MKIVCYGVRPIEEPYFEKLNK---YDFDLKLVTEFLTd-DNVDEAKGMDAILIRGNCaASAKNLKIFAEdYGIKYVFTRS 76  Lactobacillus cole...
ABJ63367    2 VKITSYGVRPIEQPYFDKLNK---YDFDMTYVEELLTh-DNVTAAQGADAVLVRGNCvVDRQNLEAFAG-WGIKYVFTRS 76  Lactobacillus brev...
BAB80236    2 IKLVCYGVRETEVPYFHKLNEe--FGYDLTLVEKNLNh-ENVEEAIGAEAIMVRGNCmADRQNLELLKS-KGLKYVLTRT 77  Clostridium perfri...
EFY08832    1 MKLLCYGVRPVEKQFFVELNEk--FNFDLVLTEKMLNd-ETVHMAEGCEAVMLRGNCpGNRQNLEIYKN-YGVKYVLTRT 76  Erysipelothrix rhu...
Feature 1                            #    #                                              # ###
1XDW_A     78 AGTDHIDKEYAKELGFPMAFVPrYSPNAIAELAVTQAMMLLRHTAYTTSRTakkNFKVDAFMFSKEVRNCTVGVVGLGRI 157 Acidaminococcus fe...
AAL94683   80 VGTNHIDVKYAKELGFKLAYVPfYSPNAIAELAVSLAMSLLRHLPYTAEKFknrNFTVDAQMFSKEVRNCTVGVIGLGRI 159 Fusobacterium nucl...
EEW92998   78 VGVNHIDAPYARELGFKLGYVPfYSPNAISELAVTLAMTLLRNVAYTVSKTskqDFRVDAQMFAKEIRNCTVGVVGIGRI 157 Granulicatella ele...
EEV19363   78 VGVNHIDIPYAKELGFKMAYVPfYSPNAIAELALTLAMTLLRNVTYTGNKTkdkNFIVDKQMFSREVRNCTVGVLGLGRI 157 Treponema vincenti...
EFK32800   76 VGVDHFDLEAAKDLGISVARVPnYSPYAVANLAFTLGLTLSRHVGEAAHHVheqDFGMHPDYFATEFNRLKVGIYGAGKI 155 Lactobacillus delb...
CBL90977   77 VGYDHIDLKAAQTLGITVARVPsYSPYAVADLAMNLGITLVRRTAIATSRAavaDFKVEPDLFGREIHDLTVGIIGTGRI 156 Leuconostoc gasico...
EEU30875   77 VGYNHIDLKAAKELGIQIARVPnYSPYAVAELAMTLGMQLFRHTSIATTDSaagNFKVTPNLFSKEIHSSTVGIIGAGKI 156 Lactobacillus cole...
ABJ63367   77 VGFNHMDLQAAADLGIEMARVPgYSPYAVAELAFTLGMTLFRHVNLAISQTrqaDFTISNAMFSKEIHTATVGIVGIGRL 156 Lactobacillus brev...
BAB80236   78 VGFDHVDLDAAKDLGLQVARVPgYSPNAIGELAVSLAMMLLRHTAYTTNRTsnkNFVVDGFMFSKEIRNCTVGILGAGRI 157 Clostridium perfri...
EFY08832   77 VGYNHIDLEAAKEFGLKVAYVPfYSPNAIAELALTLSLTLARHTQYTANNThkgNFKIDDFMFSKEIRKSTVGIIGLGKI 156 Erysipelothrix rhu...
Feature 1     #                ###                           ####    #  #                 ### 
1XDW_A    158 GRVAAQIFHGMGATVIGEDVFEIKGiEDYCTqvSLDEVLEKSDIITIHAPYIKE-NGAVVTRDFLKKMKDGAILVNCARG 236 Acidaminococcus fe...
AAL94683  160 GFTAAKLFKGLGANVIGYDMFPKTGvEDIVTqvPMDELIKKSDIITLHAPFIKE-NGKIVTKEFLNNMKENSILINTARG 238 Fusobacterium nucl...
EEW92998  158 GLTTASLFKGLGAKVLAYDAFPKEGvEDICTqvSLDELLANSDVISIHAPYIPA-NGKVITKEFISKMKKGAILVNTARG 236 Granulicatella ele...
EEV19363  158 GMTAAKLFKGLGANVIGFDIFPKTGvEDIVTqmSMDEVLAKSDIITLHAPYIKE-NGKIITKEAIAKMKDNVILINTGRG 236 Treponema vincenti...
EFK32800  156 GAVEGKMWQALGAEVYAYDPFPSDFaKQYCTfvSEDELLATCDIVSVHVPYFPGkNDKLMNAEFIAKMKKGAVLVNTARG 235 Lactobacillus delb...
CBL90977  157 GLAEAKLYKGMGAKIIGYDIYESDTaKSILKfvSQEELLSMSDVVSLHVPHFPGkNDHFFDTKLINQMKRGAILINTSRA 236 Leuconostoc gasico...
EEU30875  157 GTAEARLYSGMGTKVLASDSHPSKQaAEYVEfePLDDVLAKSDIVSVHIPYFPGeNENFIDVDFLKKMKKSAILVNTARG 236 Lactobacillus cole...
ABJ63367  157 GYTEAKLYKALGAKVVAYDPYPSDAaKELAElvDLPTLLAQSDIVSIHVPYFPGkNEDLVNTDFIQQMKSGAVLINTARG 236 Lactobacillus brev...
BAB80236  158 GLTTAKLFKGLGAKVVAYDVFQSDAaKEIVEfmPLDEVLKVSDVISVHMPYIKGqNYHMINEEFISKMKNDAIIINTARG 237 Clostridium perfri...
EFY08832  157 GFTAATIFKGVGANVIGYDVVEKDYlGDTCTqvDLETLLKESDIISMHMPYFKGsNDEFLNAEKIAQMKDGVIVVNTSRG 236 Erysipelothrix rhu...
Feature 1                           ##                                        # ##            
1XDW_A    237 QLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKdle----gqkLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEV 312 Acidaminococcus fe...
AAL94683  239 ELMDLEAVIEALESGHLAAAGIDTIEGEVNYFFKnfsdkqaefrADYPLYNRLLDLYPRVLVTPHVGSYTDEAASNMIET 318 Fusobacterium nucl...
EEW92998  237 ELQDVDAIIEAVESGHLSGVGLDVLEGESVVFFKdlq----gqtIENPAVAKLVDLYPRVLITPHMGSYTDEAVLNMIET 312 Granulicatella ele...
EEV19363  237 ELVDTDALVEALESGKIYAAGIDTLDNEVEIFFKdfk----gktLPVPAFEKLINMYPKVIITPHIGSYTDEAALNMIET 312 Treponema vincenti...
EFK32800  236 ELADEAAIAVAVSSNHLSGYGADVVSNEKKIMGHkfdc---esdVPDQEVQSLMDLYPRVLLTPHMGSFTEPALEDMISL 312 Lactobacillus delb...
CBL90977  237 EITDQLAIITAIKTGQLGGFGADVILHEKEIFGQqfdd---shlLNDKEVTSLIDLYPKVLLTPHIGSYTEEALTDMINT 313 Leuconostoc gasico...
EEU30875  237 EIADTKAIVEAVKNGEIAGYAGDVTVDEKDIMGHqfds---vddIPNADVRDLVKLYPKVLLTPHMGSFTEPALEDMISI 313 Lactobacillus cole...
ABJ63367  237 ELANVPAILKGLEDGHLSGYGTDVVADEVAIIGKqfas---vneVPNQGVQDLLRANPKVLITPHVGSYTEPALQDMIRI 313 Lactobacillus brev...
BAB80236  238 ELQDIEAIVKALEEGRLGGFGADVLEGESAVFFKnle----gqkLENESYEKLISLYPRALVTPHMGSYTDEALRNMIGI 313 Clostridium perfri...
EFY08832  237 ELQNINDILDAVESEKIQGFAADVLANETKYFNKdls-----geAFDELQTRLNNLYPRVLVTPHVGSYTDEAVSNMVEY 311 Erysipelothrix rhu...
Feature 1                       
1XDW_A    313 SYQNLKDLAETGDCPNKI 330 Acidaminococcus fermentans
AAL94683  319 SFENLKEYLDTGACKNDI 336 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
EEW92998  313 SFENIKEYEETGQCKFDI 330 Granulicatella elegans ATCC 700633
EEV19363  313 TFDNIKEYVETGDCKNKI 330 Treponema vincentii ATCC 35580
EFK32800  313 SFNNFHNMATEGAVDARN 330 Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4
CBL90977  314 SYQNFNDMLVKGSTTNDV 331 Leuconostoc gasicomitatum LMG 18811
EEU30875  314 SFENFHETFTTGTNKNVL 331 Lactobacillus coleohominis 101-4-CHN
ABJ63367  314 SYDNFHDILTTGKTANAI 331 Lactobacillus brevis ATCC 367
BAB80236  314 SYENLKEYLEGNTCKNAI 331 Clostridium perfringens str. 13
EFY08832  312 SYENLQEFIDKGESKNQL 329 Erysipelothrix rhusiopathiae ATCC 19414

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