1VJV


Conserved Protein Domain Family
Peptidase_C19A

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cd02657: Peptidase_C19A 
Click on image for an interactive view with Cn3D
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Statistics
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PSSM-Id: 239122
Aligned: 19 rows
Threshold Bit Score: 353.559
Created: 22-Apr-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Active Site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Active Site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #    #                                                                       
1VJV_A     26 GFKNXGNTCYLNATLQALYRVNDLRDXIlnynpsqgvsnsgaqdeeihkqIVIEXKRCFENLQNKsfksVLPVVLLNTLR 105 baker's yeast
AAW44827  106 GLINLGNTCYLNSTLQAIRAMPEVHQALkeftpssss-----ssslpefrVTNSLKNLFVTIDNTpn-aVPPLEVISNLR 179 Cryptococcus neofo...
Q17361    103 GLANLGNTCYFNSCVQMLKEVNELVLKPaeemrirehn---drlchnlatLFNSLRDKDRALRSKge-pIKPFAAILTLS 178 nematode
XP_329109 110 GLQNFGNTCYLNSTLQVLRSIPELNDALksykge-----------qsmldPTSQLRNLYDMMSKTqe-gIPPLAFLNALR 177 Neurospora crassa
Q92353    101 GLINLGNTCYMNSTVQMLRAIPELSDAVsqfn--------------ssggLVAEYRTLLNSMQSNa--pVTPMRFLQSLR 164 fission yeast
EAL00124   38 GLTNLGNTCYLNSSLQTIFHIDDVNNRLkdytfgg--------anqansaFVLSLKSMFQQMSKKqe-vITPSTFLSLFR 108 Candida albicans S...
CAG80532  104 GLVNLGNTCYLNSSLQAMRTIPELQESLktsga-------------apgsLTNGLNHLYTQMSKTtq-pFQPYAFVIQLR 169 Yarrowia lipolytic...
EAK83140  107 GLTNLGNTCYLNATLQVLRAIPELQTALgqfdgnlg-------gadgernLTAALRDLYKNLSETte-pFPPFAFLTILR 178 Ustilago maydis 521
EAL71762  105 GLTNLGNTCYLNSTLQCLKTVPELLTIIknykpkt---------nsrysnLLKSSQGLFNDLSRLhe-pVTPSVFLNTFR 174 Dictyostelium disc...
EAK88594  125 GLENLGNTCYLNSIIHMLRSIPSFLQILrnsnlssser--tssssgnsikFLNSFKQLMDKMDGSie-rVVPGECVDLFR 201 Cryptosporidium pa...
Feature 1                                                                                     
1VJV_A    106 KCYPQFAErdsq-ggfyKQQDAEELFTQLFHSXSiv-----------------fgDKFSEDFRIQFKTTikdtandn--- 164 baker's yeast
AAW44827  180 ILAPQFAErdqr--ghyAQQDADEAWTQLVQALRaalpk-----------ngdegSVVDRLMSIELTKTlknaetee--- 243 Cryptococcus neofo...
Q17361    179 DSFPQFEKf--------KQQDANECLVSIMSNVTriyg--------------lsgWNIESLFRIQTETTmkclesde--- 233 nematode
XP_329109 178 VAFPQFAErerd-ghgyAQQDAEEAWSQILTQLKqklkise-------gdaardaSFIDKYMGLELTSVlecdepgakea 249 Neurospora crassa
Q92353    165 MEYPQFAEmsre-tggyAQQDAEECWSFLLSVLQrsl----------------ssEWVQKNMAGKLLSTmkcdenev--- 224 fission yeast
EAL00124  109 RSYPQFAEqqn---giyKQQDAEEAFSQILSSLRs-------------------eLKIDDVFKITFNTKtqclaipe--- 163 Candida albicans S...
CAG80532  170 EHFPQFAEqtq---gmyKQQDAEEAWSSIFSVLSrdl----------------kdDHVAKYLGGRYETKlvcdeapd--- 227 Yarrowia lipolytic...
EAK83140  179 QVAPQFAEmtrd-ghgfAQQDAEEVWVRIIQALQnsldglsg-----eatldpsrKFVQQYLTGHMVIKrstaeapd--- 249 Ustilago maydis 521
EAL71762  175 MCFPRFSEkspe--glyMQQDAEEAWGELLTAYAhelpldnangtdshsadlikrSMIGKLFGIQVVEKftckdnp---- 248 Dictyostelium disc...
EAK88594  202 RQFPQYSTttggafamyQQQDAEEVLGSLLTLFRneldg-----------kdgddQTIGDIFRFRMKTKfkntalet--- 267 Cryptosporidium pa...
Feature 1                                                                                     
1VJV_A    165 -ditvkeneSDSKLQCHISgt-----------tnFXRNGLLEGLNEKIekrsdltganSIYSVEKKISRLPKFLTVQYVR 232 baker's yeast
AAW44827  244 -epettsteTVLKLECNISgttn-------flmsGIQDNLNQQVEKTSatl----grnATYSMQSRVSRLPEYLVVHMVR 311 Cryptococcus neofo...
Q17361    234 --vsekkveRNNQLTCYVNqd-----------vrFLQTGIKAGFEEEMtrnseelnrdAKWQKNTQISRLPKYLTVNINR 300 nematode
XP_329109 250 geepktskeRLLKLNCHIDgqtnhl---rdgivnGLVEKLEKKSEVLDr--------eATYTKRSQISRLPKYLTVHFMR 318 Neurospora crassa
Q92353    225 --qeqpsisHDTFLSLPCHism---------htsYMTQGILEGLTQKIskhsdvlnrdAMYSKISRISRLPNYLTVNFVR 293 fission yeast
EAL00124  164 --dvtegfeEAYKLNCHIGvk-----------tnFLRDGLLAGLKETIekhnstlnadTEYETTKTITRLPKYLTVHFIR 230 Candida albicans S...
CAG80532  228 -rspvmgteDFAKLHCHISistn-------ylvdGLQAGLTETLEKNDeel----grnASFTKTRRITRLPKYLTVQYVR 295 Yarrowia lipolytic...
EAK83140  250 -epasiskdPFSILQCNISst-----------tnEMTSGILDSLNQQVektsstlnrtAVYDETSRIDRLPAYLATHFVR 317 Ustilago maydis 521
EAL71762  249 --eeepttrEETLLKLACNitv---------etsYLFDGLKKGLEEEIskasptlhkdAIYTKKTLIKQLPKYIMVQFVR 317 Dictyostelium disc...
EAK88594  268 --deevkmeENYKLMCHMGtqlnpvdfltqgiklSLDEKVEKKSSETGi--------dSIYQKTSEIDSLPPYLLVQLVR 337 Cryptosporidium pa...
Feature 1                                                                                     
1VJV_A    233 FFWKrst------nkKSKILRKVVFPFQLDVADXLTpeyaaekvkvrdelrkvekeknekereikrrkfdpsssen---- 302 baker's yeast
AAW44827  312 FYWRrdi------qkKAKIMRKVKFPLELDLSDIVTeplrkkiqplntatkqilkerdaranilkrkp------------ 373 Cryptococcus neofo...
Q17361    301 FFYKest------ktNAKILKSVQFPMQLDTYDLCSqelkdklvarradikleedaklerelrkk--------------- 359 nematode
XP_329109 319 FFWKrev------qkKAKIMRKVTFPHELDVVEFCTdelrkalipvrdkvrevrkeehdierarkrrkmnpidgenaqgs 392 Neurospora crassa
Q92353    294 FYWKasi------gkKAKILRKVKFPFELDAVEFCTpelsqklipvrdklreiekndeeheraakrikiqp--------- 358 fission yeast
EAL00124  231 FFWKrdi------nkKSKILRKVQFPFELDLAEMLDvsikadkvsnrdtirkvekdnldmirdfkktkndtslt------ 298 Candida albicans S...
CAG80532  296 FFWRrdt------qkKSKILRKVIFPINELDVTPLCsdelkaklipvrdrvreigkekedarraakrakmneev------ 363 Yarrowia lipolytic...
EAK83140  318 FYWRrdi------nkKTKIMRKVKFPFVLDATPFLSdelkektkqtnlvmkniekerderakirkrakaskiaqekaare 391 Ustilago maydis 521
EAL71762  318 FHWKdat------ktKSKIVRVVQFPFTLDLFDLCTpeykerlspnrkrvedefnaslerkrkviggsgdgndeddk--- 388 Dictyostelium disc...
EAK88594  338 FEWKksseiarteatRAKVCRKIEFSQNLDLYEFCSedlkkilnigrdisekkksk------------------------ 393 Cryptosporidium pa...
Feature 1                                                                                     
1VJV_A    303 -------------------------------vxtpreqyetqvalnesekdqwleeykkhfppnlekgenPSCVYNLIGV 351 baker's yeast
AAW44827  374 ---------------------------------------gqgldeeekkrgeekamveelvkeggltsgeGSGMYELAAV 414 Cryptococcus neofo...
Q17361    360 ------------------------------------------vldkeqgdkifddgvalptafeddagsnNSGFYDLKGI 397 nematode
XP_329109 393 qpstskdkkk------dekkpaggdvemtteetfktdaefeaekeaevlaakkelytlinqdllkdeganQSGLYELRGV 466 Neurospora crassa
Q92353    359 ------------------------------------sedekeaeaecrltqvatcqslvdpeladdeganPTGLYDLVGV 402 fission yeast
EAL00124  299 --------------------------------pleqqeedemkitsikskfkddlnsalpnvdfntttenPSSVYELNAV 346 Candida albicans S...
CAG80532  364 ---------------------------------gatgevpadeiqqkdkeyaeeieqltdselkndvganTSGLYNLQAI 410 Yarrowia lipolytic...
EAK83140  392 akngsdvgiadasssgvvvreaeaqdgesgaraklamvlteeqelaerakereairasmhpdlladtgcnVSALYELVGV 471 Ustilago maydis 521
EAL71762  389 ------------------------------qvekkaavnndnqpqsstssndsvsttgaavdddvffkenETGKYELCAV 438 Dictyostelium disc...
EAK88594  394 --------------------------------------------------aiekpdqeeqkmetelytdcPTGVYELECV 423 Cryptosporidium pa...
Feature 1                #                                 #                             
1VJV_A    352 ITHQGANSESGHYQAFIRdeld---------------enkWYKFNDDKVSVVEKEKIESLAGGGESDSALILXYK 411 baker's yeast
AAW44827  415 VTHKGASADSGHYIGWSRvdngacv---------paeqqrWAKFDDNNVTFTDANKILSMDGGGEDSVAYILLYR 480 Cryptococcus neoformans...
Q17361    398 ITHKGRSSQDGHYVAWMRsse----------------dgkWRLFDDEHVTVVDEEAILKTSGGGDWHSAYVLLYE 456 nematode
XP_329109 467 ITHQGASADSGHYTAYVKktgikdpvt----gkvgeedgkWWWFNDDKVSEVEAEKITALAGGGESHSALILLYR 537 Neurospora crassa
Q92353    403 LSHAGASASSGHYQAWIRnsnn---------------raeWFRFNDAKVSIVPAEKIETLDGGGEADSAYILLYK 462 fission yeast
EAL00124  347 ITHAGSSADGGHYKAYVKdptdl-------------dgerWWLFNDDKVSSVNKEKIETLAGGGESDSALLLIYK 408 Candida albicans SC5314
CAG80532  411 VTHQGASADSGHYQAFVRneke---------------pgkWWKFNDDKVTEVDEAKIETLAGGGESDSALILLYK 470 Yarrowia lipolytica CLIB99
EAK83140  472 VTHKGAAADAGHYISWVRadldqprhpsardldqsdadqhWYKFDDDKVSRVSKDKIHALDGGGEDSVAYILLYR 546 Ustilago maydis 521
EAL71762  439 LTHQGRYAESGHYVAWVKkse-----------------nkWYKFDDRDVTEHTDEDIKKLSGGGDFHICYLALYR 496 Dictyostelium discoideum
EAK88594  424 VTHQGRTADSGHYVAWRYcpnd---------------reyIIKFDDDKVSRIKAKDADLSGGRSDYHIAVMLLYK 483 Cryptosporidium parvum

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