1Q47


Conserved Protein Domain Family
Sema_3A

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cd11249: Sema_3A 
Click on image for an interactive view with Cn3D
The Sema domain, a protein interacting module, of semaphorin 3A (Sema3A)
Sema3A has been reported to inhibit the growth of certain experimental tumors and to regulate endothelial cell migration and apoptosis in vitro, as well as arteriogenesis in the muscle, skin vessel permeability, and tumor angiogenesis in vivo. The function of Sema3A is mediated through receptors neuropilin-1 (NP1) and plexins, although little is known about the requirement of specific plexins in its receptor complex. It is known however that Plexin-A4 is the receptor for Sema3A in the Toll-like receptor- and sepsis-induced cytokine storm during immune response. Sema3A is a member of the Class 3 semaphorin family of secreted proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200510
Aligned: 4 rows
Threshold Bit Score: 1109.3
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 26 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:1Q47; Mouse Semaphorin 3A dimer interface, contacts at 4A distance.
  • Comment:Semaphorin/plexin signaling is dependent on the formation of a 2:2 heterotetramer that is composed of two plexin molecules bound to a semaphorin homodimer. Monomeric semaphorin binds plexin but does not trigger signaling.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1Q47_A         1 KNNVPRLKLSYKEMLESNNvitFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIK-DFQKIVWPVSYTRRDECK 79  house mouse
Q9W686        27 KSNVPRLKPSYKEMLESNNlltFNGLANSSAYHTFLLDEERGRLFVGAKDHVLSFNLVDINmDQQLISWPSSPSRRDECK 106 zebrafish
NP_001079324  26 KNNVPRLRLSYKEMVESNNlitFNGWPNSSSYNTFVLDEERGRLYVGAKDHIFSFNLANVK-EFQKILWPVTNIRRDECK 104 African clawed ...
NP_990308     26 KNNVPRLKLSYKEMLESNNivnFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIK-EYQKIVWPVSHSRRDECK 104 chicken
Feature 1                                                                                        
1Q47_A        80 WAGKDilkECANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHp-EDNIFKLQdshFENGRGKSPYDPKLLTASLLID 158 house mouse
Q9W686       107 WAGKDvqkECANFIKVLQPFNQTHLYACGTGAFHPVCAHVEVGKRs-EDNTFRLGs-sFENGRGKSPYDPKLQTASMLID 184 zebrafish
NP_001079324 105 WAGKDivkECANFIKVLKAYNHTHLYACGTGAFHPVCTYIDVGHYpeQDNVFKLEdsfFENGRGKSPYDPKLLTASILID 184 African clawed ...
NP_990308    105 WAGKDilrECANFIKVLKTYNQTHLYACGTGAFHPMCTYIEVGSHp-EDNIFRMEdshFENGRGKSPYDPKLLTASLLVD 183 chicken
Feature 1                                                                             ## #  ###  
1Q47_A       159 GELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHA 238 house mouse
Q9W686       185 GELYAGTSADFMGRDFAIFRTLGKHHPIRTEQHDSRWLNDPRFVSVHLIPESDNAEDDKIYLFFRENAIDGEQISKATHA 264 zebrafish
NP_001079324 185 GELYSGTAADFMGRDFAIFRTLGNHHPIRTEQHDSRWLNDPRFIGAYLVPESDNPEDDKVYFFFRENAIDGEHTGKATHA 264 African clawed ...
NP_990308    184 GELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKIYFFFRENAIDGEHTGKATHA 263 chicken
Feature 1                                       #  ## # #   #                      ########      
1Q47_A       239 RIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMnSKDPKNPIVYGVFTTSSNIFKGSAVCMY 318 house mouse
Q9W686       265 RIGQLCKNDFGGHRSLVNKWTTFLKARLVCSVPGLNGIDTHFDELQDVFLMsSKDPKNPIIYAVFTTSSNIFKGSAVCMY 344 zebrafish
NP_001079324 265 RIGQLCKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVVLMnSKDPKNPVVYAVFTTSSNIFKGSAVCMY 344 African clawed ...
NP_990308    264 RIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMnSKDPKNPIVYGVFTTSSNIFKGSAVCMY 343 chicken
Feature 1                           ####                                           #             
1Q47_A       319 SMSDVRRVFLGPYAHRDgpNYQWVPYQGRVPYPRPGTCPSKTFGGFdSTKDLPDDVITFARSHPAMYNPVFPINNRPIMI 398 house mouse
Q9W686       345 SMADIRRVFLGPYAHRDgpNYQWVPFLNRVPYPRPGTCPSKTFDGFeSTKDFPDDVITFARSHPAMYNPVFPINNHPIII 424 zebrafish
NP_001079324 345 SLTDIRRVFLGPYAHRDgpNYQWVPFQGRVPYPRPGTCPRQTFGGFdSTKDLPDEVIMFARSHPAMYNPVFPINNRPIII 424 African clawed ...
NP_990308    344 SMTDVRRVFLGPYAHRDgpNYQWVPYQGRVPYPRPGTCPSKTFGGFdSTKDLPDEVITFARSHPAMYNPVFPINSRPIMI 423 chicken
Feature 1         #                                                                              
1Q47_A       399 KTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWhdLEEVLLEEMTVFREPTTISAMELSTKQQQLYI 478 house mouse
Q9W686       425 KTDVDYQFTQIVVDRVEAEDGQYDVMFIGTDMGTVLKVVSIPRGTWhdLEEVLLEEMTVFREPTAITAMELSTKQQQLYL 504 zebrafish
NP_001079324 425 KTEVDYQFTQIVVDRVEAEDGQYDVMFIGTDMGTILKVVSVPKETWtdLEEVLLEEMTVFREPTAISAMEISTKQQQLYI 504 African clawed ...
NP_990308    424 KTDVDYQFTQIVVDRVDAEDGQYDVMFIGTDIGTVLKVVSIPKETWheLEEVLLEEMTVFREPTVISAMKISTKQQQLYI 503 chicken
Feature 1                       
1Q47_A       479 GStaGVAQLPLHRCD 493 house mouse
Q9W686       505 GSaiGVSQMPLHRCD 519 zebrafish
NP_001079324 505 GSsvGVSQLPLHRCD 519 African clawed frog
NP_990308    504 GSatGVSQLPLHRCD 518 chicken

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