1V63


Conserved Protein Domain Family
HMG-box_UBF1_rpt6-like

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cd22003: HMG-box_UBF1_rpt6-like 
Click on image for an interactive view with Cn3D
sixth high mobility group (HMG)-box found in upstream-binding factor 1 (UBF1) and similar proteins
UBF1, also called UBTF, nucleolar transcription factor 1, or auto-antigen NOR-90, is a nucleolar transcription factor that recognizes the ribosomal RNA gene promoter and activates transcription mediated by RNA polymerase I through cooperative interactions with the transcription factor SL1/TIF-IB complex. It binds specifically to the upstream control element. UBF1 contains six HMG-box domains. This model corresponds to the sixth one. This model also includes the second HMG-box domain of upstream-binding factor 1-like protein 1 (UBTFL1), which contains two HMG-box domains.
Statistics
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PSSM-Id: 438819
Aligned: 19 rows
Threshold Bit Score: 91.5916
Created: 10-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ## #####  ##      #         ##  #  ##      #   #  #   #  #                  
1V63_A         6 SGPKKPPMNGYQKFSQELLSNGELNHlplkERMVEIGSRWQRISQsQKEHYKKLAEEQQRQYKVHLDLWVKSLs--PQDR 83  house mouse
P0CB48       226 GEPQKPPMNGYQKFHQDSWSSKELQHlslrERMVEIGRRWQRIPQsQKDHYKSQAELLQKEYKVELDLWLKTLs--PEDY 303 human
PSN58061     341 GKPEKPPNSGYSLFSRIMLVSPQIKQvapkERMSSISKLWKSMPEsEKKKYQEQVNHMLDQYKLEYATYLESL---PEDK 417 German cockroach
XP_002738418 617 EEPKKPPPNGYALYTREMLQSEELRHlenkSRIQEIARRWKMMPDqEKKKYKLKRDKLFKKFEELRDKFEKSLt--QEEL 694 Saccoglossus ko...
RZC32331     324 GKPEKPPHSPYHLFTKMMMESENIQKisnkDSINYISEKWKACSEeEKNQYKIRMKQMWEEYKKKMDQYLMTLp--PEER 401 Asbolus verrucosus
PIK39428     519 EMPKKPHTSAYGIFTSEMMRNQDIVKldqkNKMKAVAEKWKNISKtEKRKYEAKKDRLWKKHEKDVEKYKKSLs--STDQ 596 Japanese sea cu...
EFX87125     377 GKPEKPPNSGYSLFSKKLLSSNSLKQfetkERMAEISRLWRELSDeEKTSYNDKATQMNYAYKIKYASYLETLt--PEQR 454 common water flea
KPM05167     332 GKPSRPPRSGYTLFSKEMLKNMSDIEt--nERMVKIAKIWKELPEsERNRYNDEATKLGAQYLQDLNDYLKNLpedDKER 409 Sarcoptes scabiei
OTF82489      66 GMPARPPNSGYMLFSQIMLKEFKDVPs--kEKMVLVAKRWKEMTQeERSKYNEDAQNQMSEYIRKFDEYVHTLp-dDEKK 142 Euroglyphus maynei
XP_013420897 601 GEPKRPPGSGYQLFSTDLLLNELSHIps-kDRMQEISKRWRQLDEaKKEEYKKKRNQLVKRYEKEVEKFKNKLs--PEDR 677 Lingula anatina
Feature 1                
1V63_A        84 AAYKEYIS 91  house mouse
P0CB48       304 AAYKESTY 311 human
PSN58061     418 RQEELLNN 425 German cockroach
XP_002738418 695 KRYKELSE 702 Saccoglossus kowalevskii
RZC32331     402 NEVAEEEF 409 Asbolus verrucosus
PIK39428     597 ELLEKVLT 604 Japanese sea cucumber
EFX87125     455 NAELLSSV 462 common water flea
KPM05167     410 AFLEEKSY 417 Sarcoptes scabiei
OTF82489     143 QLLIEQGH 150 Euroglyphus maynei
XP_013420897 678 QKYEDYLN 685 Lingula anatina

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