6PFV


Conserved Protein Domain Family
FliA

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COG1191: FliA 
DNA-directed RNA polymerase specialized sigma subunit [Transcription]
DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Statistics
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PSSM-Id: 440804
Aligned: 768 rows
Threshold Bit Score: 59.4522
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6PFV_A        32 LWrsyketgdeRlREqLILHYSPLVKYVAGRVSVGLp-sNVEqaDFVSSGVFGLIDAIEKFDVERAVKFETYAITRIRGA 110
NP_348395     10 RIqkak--eskEeLNrLIQEYKPFIASLLQKKTGKYlqyGYD--DELSIGMIAFEEAVESYDRNKGK-FLSFAKRVIILR 84 
WP_013276782   9 RVmmik--snkDeVNrLIEEYRPFIASVVEKYLGRRveyGID--DELSVAMIAFDEAVQRYDIKKGN-FLAFARNVIRSR 83 
WP_020457849   9 RVeaik--nneEeINlFVEEYKPFIAACTQKVVGRYvayGQD--DELSIALMAFVETIRSYDVSKGN-FLSFSQNVIKRR 83 
WP_013121414  12 SIkkik-ngdlAaRDqLLNEYRPFVWKVASSICKRSltwGVD--DELSVALIAFNDALDAYEPGKNVSFLTYSRVIILNR 88 
WP_078666356   4 LVlraq-qgdrQlREqLLQEYQPFIVKIASQTVGRFlnwGVD--EELNIALTAFDEAILRFQQKKGTPFLPFAALVIRSR 80 
WP_106790363  10 RVaaar--sssEeADrLVRDYLPFIKAETAKFLHRPpveGQD--DELSIAMFAFYEAVLNYEKARGT-FLAFASRGIRNR 84 
WP_103081910   9 RVerik--dneEeINrLVEEYKPFIASCVEKATGRYmryGED--DELSIGLMAFVEAIKSHDSKKGN-FLSFAQNVIRRR 83 
WP_112182020  12 YIkaas-ngddIaREkLINHHKPYIINTVGHVCKRFit-wSD--EESSLGLLAFDRAIDTYDSCANKSFLNYVYLLIKRE 87 
WP_013779133  10 RVidik--nnnQeVSrLIEEYKPFIASTVENHLGRYveyGVD--DELSIAMIAFHEAIKKYDITKGN-FLSFARVTVKRR 84 
6PFV_A       111 MIDELRALDWIPRSVRqkarnVERAYAT----LEAQLGR-TPSETEVAAEMdislEDLHAvfsqlslanvvALEellhvG 185
NP_348395     85 AIDYYRKNQKFKNIVYlqgnydSENNDIn--pIMFNKAMeQYKNKSINEIRrleiLEYKK-----------ELRe---wG 148
WP_013276782  84 LVDYYRRERKNRETVMyivqnqEDEEYEl--dISIEESIkKHREEEISEQRrleiLEIKK-----------ELEk---wG 147
WP_020457849  84 IIDYYRKEKKHSVVVNin-ghLEDEEEEt--dLGIAMSIdKYSEEEISEYRrlelEQLKK-----------ELKe---wD 146
WP_013121414  89 LKDLFRKQAKLSNEVPf---eTELENGEifnlADTKAAWeEYQNKTIEDERqeelERYEK-----------LIRd---fG 151
WP_078666356  81 LLDWLRAEQRHQH-LSl---dIENEQEEdfspAELQLSLaQYQARSLAEERglelALLEE-----------KLRp---fA 142
WP_106790363  85 LIDHYRKESRHGKVISfdqpdSKDEDRTlldtLESGES--NVEEGQIRMAAreeiEEYAR-----------GLAe---fG 148
WP_103081910  84 LIDYYRKEKKHSNMLSlngyydEGEDGEr--dLGIGEALeNYTINEINEYRrlelEELKK-----------ELLr---wD 147
WP_112182020  88 LIDYFRRETK-LKHIPlevesINSEDsv--tvYDVDHSMdTYHQHLQQRELveeiLELSE-----------ILKq---fN 150
WP_013779133  85 LIDYYRKEQRKSSRVVhaepiqQQDDESi--dIFAAESVkEYTEAQISQWRrleiQEIKK-----------ELEl---wG 148
6PFV_A       186 geggDRLSlmdtledtaAdNPvevaEDRELRRLLARAINTLPEREKTVVTLYYYEGLTLAEIGHVLGVTESRVSQIHTKS 265
NP_348395    149 iefvNLVQ---------A-SP----KQEKLKKTYKNIANVIVHNQDILNKLIRVKRLPIKEIEKNIYINRKKLERGRIYI 214
WP_013276782 148 ltfsDVAK---------S-SP----KQEGTRRIYLQVIDFIMSSPEILDTIKQKKYLPVDKIVKATKIPRKKIERGRNYI 213
WP_020457849 147 isffDLVN---------I-SP----KHKRTKKIYSKIIKFVLSRPDIMEKIKQKKYLPVAEIEQSLKIPRKTIERARKYI 212
WP_013121414 152 iefeDLVE---------C-SP----KHRDSRETLFTVARTLVNNKELMDHLLFRKQLPLNSLQDLTGVNRKTLERGRKFI 217
WP_078666356 143 isfnDLVD---------S-AP----RHRDTKQALVKAARYLAQNQSLFQQLLEKKTVPAKQLAEVSGVSLKTLEKGRKYL 208
WP_106790363 149 isltDVAD---------N-CP----KQDRTLEACYQALACAKENPWLLERFLATRKLPIQDLTELSRVSRKTLERHRKYI 214
WP_103081910 148 itfsQLAD---------A-SP----KHGRTRKIYAEIIRYLQSQPDLVKQIMSKKYLPVAEIERALGLPRKKIERARKYI 213
WP_112182020 151 iefeELEA---------C-SP----THRKTKANLITIANDFIQNPELVDFFLKKKRFPVTRFIEVSGHRLKTVERHRKYI 216
WP_013779133 149 isfsDVAK---------S-SP----KQEGTKQTYLKAIDFIVNNPEILDIVKQRKYLPIGKITSALKISRKSIERGRNYI 214
6PFV_A       266 VLq------------LRAKLA-D 275
NP_348395    215 IAlviaei--gdyrlIREYIE-- 233
WP_013276782 214 IAaviils--gdyryIKEYIKwG 234
WP_020457849 213 ITvviift--gdyefIRDYVNwE 233
WP_013121414 218 IAtalvlyfkedfiyLYSYINfK 240
WP_078666356 209 IAvalilhdatefvhLIYYLKpL 231
WP_106790363 215 AAlflayt--ngyeiIRGHLCqI 235
WP_103081910 214 IAvliiit--gdyqyIRDFVDwR 234
WP_112182020 217 VAlvvvrl-hpewrqLSAYIQvT 238
WP_013779133 215 VAavlils--gdyqfINEYIKwR 235
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