5IRX


Conserved Protein Domain Family
TRPV1

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cd22196: TRPV1 
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), type 1
Vanilloid receptor 1 (TRPV1), a capsaicin (vanilloid) receptor, is the founding member of the vanilloid TRP subfamily (TRPV). In humans, it is expressed in the brain, kidney, pancreas, testis, uterus, spleen, stomach, small intestine, lung and liver. TRPV1 has been implicated to have function in thermo-sensation (heat), autonomic thermoregulation, nociception, food intake regulation, and multiple functions in the gastrointestinal (GI) tract. The receptor has also been involved in growth cone guidance, long-term depression, endocannabinoid signaling and osmosensing in the central nervous system. TRPV1 is up regulated in several human pathological conditions including vulvodynia, GI inflammation, Crohn's disease and ulcerative colitis. TRPV1 knock-out mice exhibit impaired sensation to thermal-mechanical acute pain. The structure of TRPV shows the typical topology features of all Transient Receptor Potential (TRP) ion channel family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6 and large intracellular N- and C-terminal domains.
Statistics
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PSSM-Id: 411980
Aligned: 5 rows
Threshold Bit Score: 1133.76
Created: 1-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 30 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Comment:All members of the TRPV channel subfamily have a basic architecture of homo- or hetero-tetrameric arrangements around a central pore. Different subunits within the TRP family are also able to form heteromeric channels, with the heteromeric channels exhibiting distinct functional properties as compared to the homomeric channels.
  • Structure:5IRX: Rattus norvegicus TPRV1 forms a homotetramer; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
5IRX_A         3 GSRLYDRRSIFDAVaqsNCQELESLLPFLqrskkrltdsEFKDPETGKTClLKAMLNLHNgQNDTIALLLDVArktdsLK 82  Rattus norvegicus
XP_028662798  84 GAAKFDLKTLFDAVasgDVSRLDGLQNYLrktlkqlthsDFKDPVNGKTClLKALLNLKDgQNDTIDVLLDIAekegyLK 163 reedfish
NP_001177322 120 TFKLYDQRRIFDAAaygDCEELDDLLVYLlrthkrltneEFKEKETGKTClLKAMLNLDKgMNHTILLFLEIAektdnLK 199 African clawed ...
XP_007894726 119 SPSIYNRHWLFEMVskgTAKELDGFEEHLmrnkkyltdwEYKDPETGKTAlLKALLNLNNkKNDTVSRLLEIAekgnnLK 198 elephant shark
NP_989903    115 AFKFYDRRRIFDAVargSTKDLDDLLLYLnrtlkhltddEFKEPETGKTClLKAMLNLHDgKNDTIPLLLDIAkktgtLK 194 chicken
Feature 1                                                                                        
5IRX_A        83 QFVNASYTDSYYKGQTALHIAIERRnmTLVTLLVENgadvqaAANGDFFkktkgrPGFYFGELPLSLAACTNqLAIVKFL 162 Rattus norvegicus
XP_028662798 164 DFVNAAYTDSYYKGQSALHVAIERRnrHYVEMLVQKgadvnaRASGKFFqln-egNGFYFGELPLALAACTNqMDIVKFL 242 reedfish
NP_001177322 200 EFINSAYRDNYYRGQTALHIAIERRnmDLVQLLLQHgadvhaRADGEFFrkakgkAGFYFGELPLSLAACTNqTAIVRYL 279 African clawed ...
XP_007894726 199 EFINAAYTDSYYRGQTALHVAIERRsaHFVELLVRNgadvhaRASGIFFkqkksgDGFYFGELPLSLAACTNqLDIVTFL 278 elephant shark
NP_989903    195 EFVNAEYTDNYYKGQTALHIAIERRnmYLVKLLVQNgadvhaRACGEFFrkikgkPGFYFGELPLSLAACTNqLCIVKFL 274 chicken
Feature 1                                                                                        
5IRX_A       163 LQNSwqpadisardsvGNTVLHALVEVADntvdNTKFVTSMYNEILILGaklhptlKLEEITNRKGLTPLALAASSgKIG 242 Rattus norvegicus
XP_028662798 243 MENPyekakvdatdsmGNTVLHALVTVADntlvNTKFVTMMYDEILRKGnqlypkiKLESITNNRKLTPLKLAAKTgKLE 322 reedfish
NP_001177322 280 LQNQhspaniaardsfGNTVLHALVDIADntqeNTAFVTKMYNEILVLGaqikpslKIEEIANKKGLTPLSLAAKTgKIG 359 African clawed ...
XP_007894726 279 LENPhsradvsavdsrGNNVLHALVAVADntpeNTKFVTKMYNGLLMKSvkirpleNLEATTNKKGLTPLKLAAKTgKLQ 358 elephant shark
NP_989903    275 LENPyqaadiaaedsmGNMVLHTLVEIADntkdNTKFVTKMYNNILILGakinpilKLEELTNKKGLTPLTLAAKTgKIG 354 chicken
Feature 1                                                                                        
5IRX_A       243 VLAYILQReihepecrhlsRKFTEWAYGPVHSSLYDLScIDTCEKNSVLEVIAYSSsetpnrhdmllvEPLNRLLQDKWD 322 Rattus norvegicus
XP_028662798 323 IFKHIIGRefpekdcrhlsRKFTEWVYGPVHSCLYDIDsIDSYEKNSVLEILVYGSeipnrh-ellciEPLNKVLEDKWK 401 reedfish
NP_001177322 360 VFAYILRReiknlecrhlsRKFTEWAYGPVHSSLYDLSgVDTYEKNSVLEIIAYSSetpnrh-dmllvEPLNKLLQDKWD 438 African clawed ...
XP_007894726 359 LFKDIMGRevqeeecrhlsRKFTEWAYGPVHSSLYDLSsLDTDDEQSVLEIIVHGTknefrh-emllvEPLNKLLQEKWN 437 elephant shark
NP_989903    355 IFAYILRReikdpecrhlsRKFTEWAYGPVHSSLYDLScIDTCEKNSVLEIIAYSSetpnrh-emllvEPLNRLLQDKWD 433 chicken
Feature 1                                ## #                                                    
5IRX_A       323 RfvKRIFYFNFFVYCLYMIIFTAAAYYRpveglpp--yklkntVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRpslks 400 Rattus norvegicus
XP_028662798 402 KfvSKIFFTNFFFYLMYLITFTMIAYYRkegkps---fhientPLEYLRLAGQLISLSGAVYFFIKGIKDLLKKRttwqg 478 reedfish
NP_001177322 439 HfvKRIFYFNFFAYIIYVIIFTIAAYYRpvdgsp----pfpvqYGSYLRTSGELITVIGGIYFFFRAIQYFTQRRpslka 514 African clawed ...
XP_007894726 438 KfaRFIFCVDFFIYFAYMTVFTLVGYNRkenmtlp--fpiehtTEGYLRLTGQIITLLGAFYLFFTGIHTVIFRRmfrgk 515 elephant shark
NP_989903    434 RfvKHLFYFNFFVYAIHISILTTAAYYRpvqkgdkppfafghsTGEYFRVTGEILSVLGGLYFFFRGIQYFVQRRpslkt 513 chicken
Feature 1                                         ## ##  ## ##  ##  #           #  ##  ##        
5IRX_A       401 l----fvdsysEILFFVQSLFMLVSVVLYFSqrKEYVASMVFSLAMGWTNMLYYTRgfqQMGIYAVMIEKMILrdLCRFM 476 Rattus norvegicus
XP_028662798 479 l----iidgyyEILFFLQALFFLTATVLYFLrqEEYVACLVLSLALAWVDVLYYTRgfkHLGIYSVMIQKMILrdIMRFL 554 reedfish
NP_001177322 515 l----ladsycEFLFFSQSVFLLLSTVLYFCgrNEYVAFLVICLAMSWANVLYYTRgfqLMGIYSVMIEKLILsdMVRFL 590 African clawed ...
XP_007894726 516 svkpitvdsycDILSFVQSLMLLASALLYTTgrNEYVGFMVIAMALGWINTLYYSRgfyRMGVYSVMVQKILVtdILRFL 595 elephant shark
NP_989903    514 l----ivdsysEVLFFVHSLLLLSSVVLYFCgqELYVASMVFSLALGWANMLYYTRgfqQMGIYSVMIAKMILrdLCRFM 589 chicken
Feature 1                                                              #   #  ##  # #            
5IRX_A       477 FVYLVFLFGFSTAVVTLIEDGK----------------------------YNSLYSTCLELFKFTIgMGDLEFTENYDFK 528 Rattus norvegicus
XP_028662798 555 IVYMVFLIGFSASLVTLIEDSPakafvgig------------dgtcnnksYNSIYFTTQELFKFTIgMGDLEFTEQFNFK 622 reedfish
NP_001177322 591 FVYLLFLFGFAAALVTLIEDGEgrtdvnntcg--------rrcckpepasYNNLYYTCQELFKFAIgMGDLEFTDNYKYK 662 African clawed ...
XP_007894726 596 IVYIVFLFGFGVALVTLIEEGPpkgrmatsqknyrllsktecvcdsgyntYKDLYSTFLELFRFTIgMGDLEFTEDYKFK 675 elephant shark
NP_989903    590 FVYLVFLLGFSTAVVTLIEDDNegqdtnsseya------rcshtkrgrtsYNSLYYTCLELFKFTIgMGDLEFTENYRFK 663 chicken
Feature 1                          #   #  #   ##                                                 
5IRX_A       529 AVFIILLLAYVILTYILLLNMLIALMGETVNKIAQEsKNIWKLQRAITILDTEKsflkcmrkafrsgkllqVGFTPDGKD 608 Rattus norvegicus
XP_028662798 623 HLFYFLLICYIILTYILLLNMLIALMSETVDKISKEsKNIWKLQRAITIFDLEKslpryl------ksklrSGITKDLGS 696 reedfish
NP_001177322 663 PVFIFLLITYVILTYILLLNMLIALMGETVSKVAQEsKSIWKLQRAITILDIEKsflnsfrdtfrsgksvlVGITPDGKE 742 African clawed ...
XP_007894726 676 EVFILLLISYVILTYILLLNLLIALMSQTVEKISKDsKNIWKLQRAVTILDLERslprclrdrlrsgesvvVGMTPDNKE 755 elephant shark
NP_989903    664 SVFVILLVLYVILTYILLLNMLIALMGETVSKIAQEsKSIWKLQRAITILDIENsylnclrrsfrsgkrvlVGITPDGQD 743 chicken
Feature 1                                    
5IRX_A       609 ----DYRWCFRVDEVNWTTWNTNVGIIN 632 Rattus norvegicus
XP_028662798 697 saneDIRRCFRVETVNWNQWNSNLGIIN 724 reedfish
NP_001177322 743 ----DYRWCFRVDEVNWNKWNSNLGIIK 766 African clawed frog
XP_007894726 756 ----DMRRCYRIDEVNWTKWNTNLGLIN 779 elephant shark
NP_989903    744 ----DYRWCFRVDEVNWSTWNTNLGIIN 767 chicken

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