1H6E,2XA7,2PR9,1I31,1BW8,1BXX,2BP5


Conserved Protein Domain Family
AP-2_Mu2_Cterm

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cd09251: AP-2_Mu2_Cterm 
Click on image for an interactive view with Cn3D
C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2
AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, -2, -3, and -4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 2 (AP-2) medium mu2 subunit. Mu2 is ubiquitously expressed in mammals. In higher eukaryotes, AP-2 plays a critical role in clathrin-mediated endocytosis from the plasma membrane in different cells. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-2. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-2 mu2 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Since the Y-X-X-Phi binding site is buried in the core structure of AP-2, a phosphorylation induced conformational change is required when the cargo molecules binds to AP-2. In addition, the C-terminal domain of mu2 subunit has been shown to bind other molecules. For instance, it can bind phosphoinositides, in particular PI[4,5]P2, which might be involved in the recognition process of the tyrosine-based signals. It can also interact with synaptotagmins, a family of important modulators of calcium-dependent neurosecretion within the synaptic vesicle (SV) membrane. Since many of the other endocytic adaptors responsible for biogenesis of synaptic vesicles exist, in the absence of AP-2, clathrin-mediated endocytosis can still occur. However, the cells may not survive in the complete absence of clathrin as well as AP-2.
Statistics
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PSSM-Id: 271159
Aligned: 48 rows
Threshold Bit Score: 348.429
Created: 27-Jul-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
signal peptideAP-2 beta
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:signal peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1H6E; Human mu2 adaptin subunit of AP-2 adaptor with bound signal peptides
    View structure with Cn3D
  • Comment:Based on structure that shows that human mu2 adaptin subunit of AP-2 adaptor binds signal peptides.
  • Comment:C-terminal domain of heterotetrameric adaptor protein (AP) complexes medium mu subunits binds Y-X-X-Phi-type tyrosine-based signals, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val.
  • Citation:PMID 9812899

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ###                           #                                           
1H6E_A        21 YRRNELFLDVLESVNLLMSPq-GQVLSAHVSGRVVMKSYLSGMPECKFGMNdkiviekqgkgt---------------ad 84  human
EEQ47314     212 YRRNEIFLNVTERVNVLMNSq-SDVLNAYVDGSIQMKTHLSGMPLCRFGFNdntillsn--------------------- 269 Candida albican...
XP_001527033 211 YRRNEIFVHVEEKLNVLFNSq-GELLRSYVDGAIQLKTHLSGMPQCRFGFNpstillsdtd------------------- 270 Lodderomyces el...
XP_001317045 165 YRTNEIYVDVVEKVSMLASAg-GKILDASVNGAINMKAYLSGMPECKIGFNdkisgqagqysg---------------gg 228 Trichomonas vag...
XP_452370    192 YKKNEVYLDINEKITILVGKd-GSIVKSFVDGSVDCVSHLSGMPLCQLGLNdtysihgnekselsivemm-seydiknkk 269 Kluyveromyces l...
EDK39634     198 YRRNEVFVNIEEKVSALISPegGSVLRSSVDGTVNMRTHLSGMPECRFGLGddcvflssas------------------- 258 Pichia guillier...
XP_649503    154 YKKNQLFLDVIESVNLTVSAk-GTILSNDVNGVIKMRTQLSGMPDCSLGMNdkalllg---------------------- 210 Entamoeba histo...
XP_002614694 191 YRRNEIHLNVDEKVHVLIDAr-GQALRSYIDGTITMKTRLSGMPVCRFGLAderdd------------------------ 245 Clavispora lusi...
Q99186       207 HKKDEVFLYVNERINILVSRd-GSILKSYVDGTIDITTHLSGTPICRFGLNdslgmqsedekkwlaqqqrhsgsdfgnkn 285 Saccharomyces c...
EET02279     165 YKRNEIFIDVVESINAMFNNv-GQSLHADVSGKIIIKNSLTGMPDCSFGFNdrvvgagangprt------------evaq 231 Giardia intesti...
Feature 1                                                                                        
1H6E_A        85 etsksgkqsIAIDDCTFHQCVRLSkfdsERSISFIPPDGEFELMRYRTTkdiiLPFRVIPLVREVGr-TKLEVKVVIKSN 163 human
EEQ47314     270 --deprdgaVTLEDSKFHQCVQLNvfetERAIQFVPPDGEFQLMSYNCNsninVPFKVYPQVQEIGr-SKLMYKIRIKSF 346 Candida albican...
XP_001527033 271 pdtdskdnvVKLEDAKFHQCVQLSafdsDRSIQFIPPDGDFQMMSYNCRhninIPFRIYTQVREVG--ERIYYKIKVRSF 348 Lodderomyces el...
XP_001317045 229 gavsragasIEVDDMVFHQCVKLTsfanDRAIAFIPPDGEFELMRYRKTenvsLPFKIDPLVKDISk-NKIEIRVSVTSN 307 Trichomonas vag...
XP_452370    270 aipnaaagsVILEDCKFHQCVQLNkyeaNHVIQFVPPDGPFQLMQYRVIdninIPFNVIPEVEIVKn-STLNYKVTLRSL 348 Kluyveromyces l...
EDK39634     259 shssdtdsgVVLENTKLHHSVDLSrfdsNREIQFIPPDGEFQLMSYHCSsninLPFDIIPEIHQSG--HKIVYKIKIRSL 336 Pichia guillier...
XP_649503    211 --dsaqkksIQLADVTFHQCVRLTrfdqDRSINFIPPDGDFDLMKYRTTdnisQQFRLLHNIKESSk-THLSLDINVRAL 287 Entamoeba histo...
XP_002614694 246 -----algsVSLDDFKFHQCVDLAmydsEHVIRFVPPDGTFQLMSYHLArrgsLPFSLIPRVDELP--DKLCLTLHIRSN 318 Clavispora lusi...
Q99186       286 fipkaaagsVLLEDCKFHECVSLDkfnrNHIIEFVPPDGSMELMKYHVRdninLPFKVTPIVTHSTrdNEIDYRITLKSL 365 Saccharomyces c...
EET02279     232 qvagvsqagVVMDDLSFHHCVRLGnfavDRSIAFVPPDGEFQLMAFRVTeevkEPFSIKPIVTVHGr-NRMEIVLNLRCG 310 Giardia intesti...
Feature 1               #                                                                        
1H6E_A       164 FkpsLLAQKIEVRIPTPl-NTSGVQVICmkGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTndk------kkWAR 236 human
EEQ47314     347 FpekLPATNVSLKIPTPrgGTILSNLSSsiGKTKFHPEDNSISWKCNKFFGEQEHVLTAEIEVNSSsde-----llyWTR 421 Candida albican...
XP_001527033 349 FspkTSSSNIIVKIPTPg-GASLQSLSVsgGKAKFHPDENAFIWRLNKFYGDTEHSINAEVAIQPLsss-----ytqWNR 422 Lodderomyces el...
XP_001317045 308 YdmkLSATPLIVKIPMPe-NASETQIEQsqGKGVFVGEQNAVIWKINGFAGKTQADITIYVTCLASttne---spslKIK 383 Trichomonas vag...
XP_452370    349 FpsnVSAKDVTVKIPVPp-TTIKCDFNVsgGKCKYDAGEKCMVWKYNKYKGSTENTLSGKVAIPATshdls--dllrWSR 425 Kluyveromyces l...
EDK39634     337 FpskIAATGVVIRVPTPq-GVVRNYASPtqGKAKFHPEESAILWKFNKLFGDQSHTLTAEVGWNETtnyededtvlkWQR 415 Pichia guillier...
XP_649503    288 FselQYGENVRIKIPVPk-NAALCKTRCtaGSAKYHPEHAAILWRISRFNGKTQQTITVDVDLVQTtqs------qrWDK 360 Entamoeba histo...
XP_002614694 319 YppkTLATGVQIRVPVFk-NVGRVTAHAsvGKAQFDPETSAVVWRLNKVHGETHGQLSVEMPYGEGfs--------gWSR 389 Clavispora lusi...
Q99186       366 FpgkLSAKDVVLHIPVPp-STVDCKISVsnGHCKFVPEENAMIWRFNKYNGLTENTLSAVTVSTSDttql---nlqqWTR 441 Saccharomyces c...
EET02279     311 IpsnNVAEHVIVNIPMPs-NVSDVTAVEsiGKCRLRKDGQAAEWRIKSITGGTTASLSMEVQCVSSasid----lreWRR 385 Giardia intesti...
Feature 1               # #        ##                 #### #         
1H6E_A       237 PPISMNFEVPFa-pSGLKVRYLKVFEpklnysdhdVIKWVRYIGRSGIYETR 287 human
EEQ47314     422 PPIKLDFFLDMfssSGLTVKFLRVQEknn----yrTVKWVKYGTQSGSYEIR 469 Candida albicans WO-1
XP_001527033 423 PSITLDFELDTyssSGLAVRFLKIQEkan----ykTVKWVRYKTRSGSYETR 470 Lodderomyces elongisporus NRRL YB-4239
XP_001317045 384 DPISCEFNIPMlsaSGLALQYLKVVEksn----ytPDKWIRYLTQAGKYEVR 431 Trichomonas vaginalis G3
XP_452370    426 PPISMGFEIVMfsnSGLVVRHLKCQEpql---nyqPVKWIKYISHSGAYEIR 474 Kluyveromyces lactis NRRL Y-1140
EDK39634     416 PPIKIDFHLDMyacSGLTVKFLKIHDksn----yrTIKWVNYKCTAGNYNVR 463 Pichia guilliermondii ATCC 6260
XP_649503    361 PPILMDFVIPAltaTGLQIRYLKIASdy------kTIKWVRYITKAGAIQYR 406 Entamoeba histolytica HM-1:IMSS
XP_002614694 390 PPISMDFKMDTysaSRLAVRYLKVVEkan----yrTVKWVRYTTHAGSYEVR 437 Clavispora lusitaniae ATCC 42720
Q99186       442 PPISLEFEVMMfsnSGLVVRYFTISGkds---khrAVKWIKYISKAGSYEVR 490 Saccharomyces cerevisiae
EET02279     386 PPLAMNFDIPMytaSGIEVRYIRIIAqeg----yeTEKWLTYKTSAGTYQIR 433 Giardia intestinalis ATCC 50581

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