Conserved Protein Domain Family
ABC_peri_selen

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TIGR04553: ABC_peri_selen 
putative selenate ABC transporter periplasmic binding protein
Members of this family ABC transporter periplasmic binding proteins and represent one clade within a larger family that includes phosphate, phosphite, and phosphonate transporters. All members of the seed alignment occur near a gene for SelD, the selenium-activating protein needed to make selenocysteine or selenouridine. Context therefore suggests members should be able to transport selenate, although transporting other substrates as well (e.g. phosphonates) is possible. This model has no overlap with TIGR03431, whose members are found regularly with phosphonate catabolism operons.
Statistics
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PSSM-Id: 275346
Aligned: 11 rows
Threshold Bit Score: 443.057
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ETA66290      40 VLAVGAIPDQDPQELQRRYGTLADYLKEKVGVEVKYVPVTDYTASVTAFRRGDLQLVFFGGLTGVQARTQVSG-AIPLAQ 118 Amycolatopsis h...
WP_007152145  26 TFVFTAIPDEDETKLVERFRGVADYLSSELNVDVRYIPVKSYAAAVSAFRNNQVQLAWFGGLSGVQARRLVPG-SEAIAQ 104 Marinobacter al...
WP_008171582  26 TFIFTAIPDEDETKLVERFRGIADYLSEELDADVKYIPVKSYAAAVSAFRNNQVQLAWFGGLSGVQARSLVPG-SQAIAQ 104 Marinobacter ma...
WP_012137492  26 TFVFTAIPDEDETKLMERFQGIADYLQEELGVEVRYIPVKSYAAAVSAFRNNQVQLAWFGGLSGVQARSLVPG-SQALAQ 104 Marinobacter li...
WP_016416976  22 TFVFTAIPDEDETRLQQRFQKVADYLAEELEVDVRFVPVKSYAAAVTAFRNNQVQLAWFGGLSGVQAREHVPG-SRALAQ 100 Halomonas antic...
WP_016352665  25 VFVFTAIPDQDESELEERFNAIGAYLEEALDVEVRYVPVKSYAAAVTAFRNNQVQLAWFGGLSGVQARARVPD-SQALAR 103 Spiribacter sal...
WP_011463914  29 VFKVTAIPDESPTELARKAAPLVKYLERILGRPVEFTPVTDYAASVEALVNKQVDMAWYGGFTFVQANVRSGGkVVPLVQ 108 Rhodoferax ferr...
WP_023471954  46 VFKITAIPDESPTELARKAAPLISYLEQKLGMAVEFTPVSDYAASVEALANKQVDLAWFGGFTFVQASVRSGGkAVPLVQ 125 Betaproteobacte...
WP_012747185  27 TFRITAIPDESPTELARKSAPLAAYLERKLGVKVEFTPVTDYAAAVEALANKQVDLAWLGGFTFVQASHRSGGkVVPLVQ 106 Variovorax para...
KFI05767      37 VLRVSAIPDEAPTELQRKFEPLGKYLAKATGLKVEFTPVTDYAASVEGLINRKVDMVWFGGFTFVQANVRSKGqVVPLVQ 116 Massilia sp. BS...
WP_010812636  22 VLKVSAIPDESPTELQRKFAPLGNYLEKETGMKVKFVPVTDYAAVVEALATGKIDMAWLGGFTYVQSKIRTKGaTIPIVQ 101 Ralstonia sp. G...
ETA66290     119 RDIDADFRSVFIANTNTEIEQFDdldGLRK-LAGHSFTFGSDTSTSGRLMPQHFLSEA-GMSVDDFSGNPGYSGSHDKTA 196 Amycolatopsis h...
WP_007152145 105 GVEDQAFETYFIANTSTGIEPADelaSLEEsLQGKTFTFGSKGSTSGRLMPEFYIRETfGEQPDEFFSRVGFSGNHTRTL 184 Marinobacter al...
WP_008171582 105 GTEDQAFYVYFIAHESTGLDRQD---SLPEdVRGKTFTFGSKGSTSGRLIPEYLIRETfGEAPEDVFSRVGYSGNHTRTL 181 Marinobacter ma...
WP_012137492 105 GVEDVDFYTYFIAHKSTGLEASD---TLPEgIRGKTFTFGSKGSTSGRVMPEHYIRQTfSEAPEDVFSRVGFSGNHTRTL 181 Marinobacter li...
WP_016416976 101 GVEDAEFVTYFIAHESTGLQEGE---GLSDaMRDMTFTFGSKGSTSGRLMPEYYLREHfGEAPEETFSRVGFSGNHSRTA 177 Halomonas antic...
WP_016352665 104 GVEDEGFRSYFIAHESTGLSPSD---TLGPaLRDRTFTFGSKSSTSGRLMPEYHLRDQlGEAPEETFERVGYSGNHSRTL 180 Spiribacter sal...
WP_011463914 109 REEDEKFRSVFITSDPSIKTLAD--------LKGKSVSFGSQSSTSGHLMPRSFLLQA-HIDPDKDFKRVAYSGAHDATI 179 Rhodoferax ferr...
WP_023471954 126 RAEDEQFRSVFITSNPAINTLVD--------IKGRTLSFGSPSSTSGHLMPRSALLDV-NINPDKDLKRVAYSGAHDATI 196 Betaproteobacte...
WP_012747185 107 REEDEKFRSVFITTNPDIRSLAD--------LKGRNLSFGSQSSTSGHLMPRSFLLAA-GIDPDRDLKRVAYSGAHDATV 177 Variovorax para...
KFI05767     117 RAEDEKFRSVFITTKPDINKLED--------LKGKTLSFGSESSTSGHLMPRSFLLAA-KVNPDTDLKRVAFSGAHDATV 187 Massilia sp. BS...
WP_010812636 102 RQEDAAFTSKFITADSAIKSLAD--------LKGHTFVFGAPSSTSGHLMPRHFLLQA-GIDPDKDFKTLAYSGAHDATV 172 Ralstonia sp. G...
ETA66290     197 KLVEAGTYQTGALNSSVWDELVKSDKVDTSKVREVFRTPPYHDYHWMARPDIDDQLGDGTTDKIKQALLDLDgsdatEKK 276 Amycolatopsis h...
WP_007152145 185 RLVEAGTYEVGALNFQVWEKELADGNIDTDAVQVIWKTPAYPDYQWTIRGDVNERFGEGFKQRVTEALLNLD-----DQA 259 Marinobacter al...
WP_008171582 182 RLVESGTYEVGAMNFAVWEKELENGNIDTDAVKVIWKTPGFPNYQWSIRGDVDENYGEGFTDRVREALLSLD-----DPE 256 Marinobacter ma...
WP_012137492 182 RLVEAGTYEVGALNYAVWEKELENGNVNTDEVSVIWKTPAYPDYQWTIRGDVDARYGEGFTDKVRQALLNMD-----DPE 256 Marinobacter li...
WP_016416976 178 SLVASGAYQLGALNYTVWENEVAAGNIDTDRVNVVWETPQYPDYQWTIRGDVDERFGDGFADRVQQALLDMD-----DPE 252 Halomonas antic...
WP_016352665 181 RLVESGSYEVGAINFAVWERELADGNIDTDSVQVIWETPGYLNYQWSIRGDVDERFGEGFTDRVQDALLAMD-----DPE 255 Spiribacter sal...
WP_011463914 180 AAVAAGKVDAGALNISVWEKFVKEGKVDASKVKVFYTTPGYFDYNWTVHADMPV----ALRDKLTQAFLSLDrntaeGKE 255 Rhodoferax ferr...
WP_023471954 197 AAVAAGKVDAGALNISVWEKFVAEKKVDTSKVRVIFTTPPYFDYNWTVHADMPI----ALQQKLTQAFLDLSsdnaqGKE 272 Betaproteobacte...
WP_012747185 178 AAVASGKVDAGALNISVWDKLVADKKVDPAKVRVFYTTPAYYDYNWTVHADMPA----ARREQLVRAFIELSpatpeGKD 253 Variovorax para...
KFI05767     188 AAVAGGKVDAGALNISVWDKLVEAQKVDPKAVRVFYTTPGYYDYNWTVRSDMSP----ALQKKITDAFLALDastpeGKQ 263 Massilia sp. BS...
WP_010812636 173 AFVQAGRADAGVLNASVWDKLVEQRKVDPAKVRVFAVTPPYYDYNWTVRGGLDP----ALRKKLTEAFLRLDpanpeQRE 248 Ralstonia sp. G...
ETA66290     277 ILDMFQAGSFVDTAPGNYAQIEQVAQRLGLLN 308 Amycolatopsis halophila YIM 93223
WP_007152145 260 LLESFPRSGFIPASNDDYEPISKTAEEIGILD 291 Marinobacter algicola
WP_008171582 257 LLESFPRSDFIPASNDDYEPIRKVAKEIGIID 288 Marinobacter manganoxydans
WP_012137492 257 LLESFPRSGFIPTANENYEPIRSVAEQIGILD 288 Marinobacter lipolyticus
WP_016416976 253 LLDSFPRSGFIPASNDDYAVIREVGQELGLLD 284 Halomonas anticariensis
WP_016352665 256 LLERFPRSGFVPVSNDDYAGLKETAQTIGLID 287 Spiribacter salinus
WP_011463914 256 ILELQRATRFIATKADNYKGIEQAARNAGLLK 287 Rhodoferax ferrireducens
WP_023471954 273 VLALQRATRFVPTTAANYKGIEAAARSAGLLK 304 Betaproteobacteria bacterium MOLA814
WP_012747185 254 ILALQRATRFVPTRAENYKGIEAAARNAGLLN 285 Variovorax paradoxus
KFI05767     264 ILDLQRATRFIPTKASNYGAIEAAARNAGLLK 295 Massilia sp. BSC265
WP_010812636 249 IMALQRTARYIPTRPENYDGIEAAARAAGLIQ 280 Ralstonia sp. GA3-3
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