Conserved Protein Domain Family
Collagen_mid

?
pfam15984: Collagen_mid (this model, PSSM-Id:406398 is obsolete and has been replaced by 435053)
Bacterial collagen, middle region
Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.
Statistics
?
PSSM-Id: 406398
Aligned: 27 rows
Threshold Bit Score: 118.54
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
jgi:Q7C_65            217 SVTDGAGNIVTHAGNGVGTLSTGLHDGLGNISENDNAIGTTLGGVTGLISDTGRVVSASGQTVAALNT--MPvLA--QId 292 Methyl...
PNU:H681_15655        176 GVTDGTGGVIQQLAAGVDHVGDGITDGLGNLANNPNAIGTTLAGPTNLVSHTGEAVSSLGDTVAAIGD--GPlLTntPL- 252 Pseudo...
Q1QX01                119 fVTDGTGGVIVDVGEGVNSLSSGLNDGLGSLSENDNALGTTLGGATSAVGEVGEAVSSASTLVTGLNT--LPvVG--QLd 194 Chromo...
Q140T1                 98 QVTQGLGNAVSSTSGTLNALANAVSGGVGQTGTTANPVGTTVAGLGSVVSSTSGVVQGLSTAVGGLGS--GN-LA--PL- 171 Parabu...
Q63TR4                 99 GVTQGVGATVGSTGGIINAAADALSNGLGQTGSTQNPVGTTVAGLGNVVSATSNTVQGLSQTVQALGT--GP-LA--PL- 172 Burkho...
WP_015875980          100 GVTQGLGNTVSSLGSVVNAAADALSSGLGQTGTTANPVGTTVAGLGSVVSAAGTTVAGLGQTVDSLGT--GQ-LS--AL- 173 Burkho...
jgi:Rpic_3040         100 AAQKDLGATVTSAGNTVQTLGAGISNGLGKIGSTPDPVGTTVQSSGDVIRSAGVTVGNAGQTVSDLGAagSP-LA--PL- 175 Ralsto...
calssnu:BYI23_C007740 150 DTTRAAGDVVSNAGAAVSTLGDGVAAGLGSIGASTNPVGTTVGSLGGVVENTGATVSSAGTLVSSLGS--GT-LS--PL- 223 Burkho...
ACR29095              149 APTQALGSVVGSVGGAVSALGNGLAGGLGQLGATANPLGTTLGSTGNVVSQLGNAVTGTGNLVTSLGS--GP-LT--PL- 222 Burkho...
Q140T0                143 QTTQAAGGIVQQVGAAVSTLGGGVSQGLGQLGAGGNAVGTTVSSLGGVVGHVGGAVTDAGNLVTSLGS--GP-LA--PL- 216 Parabu...
jgi:Q7C_65            293 ekSGVLTTLGGTVDTLGLAVTGFGDYLTLSVVdeNSKLGQLSTKLTAVVRPVIINVDGTVRTVGQAVVVTPAVLGLVGKV 372 Methyl...
PNU:H681_15655        253 --NGVTGQLGGVVDGVGGKITMLGDSLTGAVT--TGPLSQLTTQLSGTTTNLLGTVENTTKTIGTTTGLGAPVNNLLTTV 328 Pseudo...
Q1QX01                195 erTHLVSGVGDTVNQLGVAVTSTAGSLTASLTaeDGHLSGLTREATSVVRPLVTNLEGTTQTLGDGLGVGQPVDGLLTSV 274 Chromo...
Q140T1                172 --APLTTPLASTLSTAAGALNAGGATLGNSLG--SVPVQQITQPISTAITPIVTTAGLVTQAVGTQTGLGAPLGGVLAQV 247 Parabu...
Q63TR4                173 --SPVTTPVAGALATAANGVNAAGTMLGNALS--TGPVQQVTQPISSALTPLVITAGQVTQTVGTTTGVGQPVSGLLQQV 248 Burkho...
WP_015875980          174 --APLTTPLGTLLNTTANGVEAGGTMLGNVLS--SSQVQAVTQPLSSAITPIVTTAGQATQTAGSATGLGAPVSGLLQQL 249 Burkho...
jgi:Rpic_3040         176 --NPVTSPVGSGVSALGQVMQGAGGLVTIGTS--SGPVQQITQQTSNAIVPLSSQVAQGTQAVGSTTMLGGPLAGALNTV 251 Ralsto...
calssnu:BYI23_C007740 224 --APVTTPVGAIVGIAGNAVTQTGSVLGNTLT--SAPVSQLTRTASQAITPITALVGSTTQTVGAATGLGTPVNNLLTKL 299 Burkho...
ACR29095              223 --APVTSTVGGLVSTLGTTVANGGATLGNVLS--TGPVQQITQTVSSAITPITAVVANTTQTVGNATGLGAPVNTLLGTI 298 Burkho...
Q140T0                217 --SALTSPLGGVVNTLGGALTNGGSTLTTALS--TGPVQQVTQTLSTAITPITSMVAATTQTVGNTTGLGAPLNGLLSTL 292 Parabu...
jgi:Q7C_65            373 GSAVVVLGEKIG--GIDNIVLADAGGVVEGVGHLLVNLDGNLTT 414 Methylophaga frappieri
PNU:H681_15655        329 GTAVTQTGDQLS---AQSPALAPVGGIVSNTGQVVTDAGGLVSG 369 Pseudomonas sp. ATCC 13867
Q1QX01                275 GGIVTQIGGRVG---ERSEALGGLGGTLQGVGNAVGDLGGLVTE 315 Chromohalobacter salexigens DSM 3043
Q140T1                248 GGALGSAGSQVGg-ATKNPLGADLGTLVGSLGNTVTNAGGLVNP 290 Paraburkholderia xenovorans LB400
Q63TR4                249 GGAISSAGTQIAgtSPSQPLVGDVGQLVSAVGNTVTNAGGLVNP 292 Burkholderia pseudomallei
WP_015875980          250 GGAVASAGTQLGs-TSSQPLVGDAGKLVSSLGNTVTNAGGLVDA 292 Burkholderia glumae
jgi:Rpic_3040         252 GGGLQSAGAQVGa-AGGNPLTRDVGGVVGAAGGTVASAGGLING 294 Ralstonia pickettii 12J
calssnu:BYI23_C007740 300 GGTLDNAGKSIVg-TGGNPVTAGVGTLVSTTGQTVATAGGLVNG 342 Burkholderia sp. YI23
ACR29095              299 GGSLNQAGSLIAtkGGGNPVTAGLGSTVSATGNTVASLGGLVTG 342 Burkholderia glumae BGR1
Q140T0                293 GGGLGKAGTLLSa-TGGNPVTAALGHTVTDTGATVASVGGLLTG 335 Paraburkholderia xenovorans LB400
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap