Conserved Protein Domain Family
FERM_C_MYLIP_IDOL

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cd13195: FERM_C_MYLIP_IDOL 
FERM domain C-lobe of E3 ubiquitin ligase myosin regulatory light chain-interacting protein (MYLIP; also called inducible degrader of the LDL receptor, IDOL)
MYLIP/IDOL is a regulator of the LDL receptor (LDLR) pathway via the nuclear receptor liver X receptor (LXR). In response to cellular cholesterol loading, the activation of LXR leads to the induction of MYLIP expression. MYLIP stimulates ubiquitination of the LDLR on its cytoplasmic tail, directing its degradation. The LXR-MYLIP-LDLR pathway provides a complementary pathway to sterol regulatory element-binding proteins for the feedback inhibition of cholesterol uptake. MYLIP has an N-terminal FERM domain and in some cases a C-terminal RING domain. The FERM domain has a cloverleaf tripart structure composed of: (1) FERM_N (A-lobe or F1); (2) FERM_M (B-lobe, or F2); and (3) FERM_C (C-lobe or F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Statistics
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PSSM-Id: 270016
Aligned: 19 rows
Threshold Bit Score: 148.936
Created: 6-Dec-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative actinputativeputative
Feature 1:putative actin binding site 2 [polypeptide binding site]
Evidence:
  • Comment:ERM and merlin proteins might utilize interaction of the second masking motif with the FERM domain to compete with and suppress the binding of this region to actin

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                              
D3ZDI6             185 YGIEWHAVRDs--eGQKLLIGVGPEGISICKEDfs--piNRIAYPVVQMATQSGKNVYLTVTKEs---GNSIVLLFKMiS 257 Norway rat
XP_003384766       199 YGVEMYHVVSg--gRIKLIAGVGPTCILVLSPQld--vfERYSYSAIHYTAFHGRKFTAMAQSAd--eGPAQQIEYELkS 272 Amphimedo...
XP_001945688       193 FGEEVFEGRTt--nGSSVLVGVGPHGISLEHPDqadhekQMIPYTAIRSAASHRRVFEMWYLAGv--eHSETLIVLKLeS 268 pea aphid
EFR30225           305 YGEEIFEGVTiaepSVVCKIGVSPHGLTIVKDEe----kYRVSFTAVKAAKSIKRSFRLTYVNEh---HEETHVELKLpN 377 Anopheles...
XP_975394          197 FGEETFTVKNh--qNNNTVYGIGPHGITIYKKDge---kELISFTNITSASSHKRTFKLEYLTId---NEGAILNIKLdS 268 red flour...
XP_790458          188 YGLNTFTAKTc--sGQLCEVGVGAHGILVTNIEtq--dcVKIPLSSVKRLSVEKRDCQMHYELDdghnFTTDKMELTLhT 263 purple ur...
XP_396349          167 FGQEMFHNTKfg-yNGVSMIGVGPHGITVYRNRde--etQNIPYTAIQSATSQRRMFHLVYLSLd---GEETSLNFKLdS 240 honey bee
FlyBase:CG12489-PA 325 YGEELFSGVTtnesATRCDIAVGAHGITVCRGGe----kQSIPFGAIAAAKSLRRTFKLEYVDDh---NDRKELEIKLpK 397 fruit fly
GAA49268           298 YGMHFYEVKDi--fERRLTFGVGPEGLVLCNTNyt--idDKFPYCRVQTITTSSRVVTLNLLEDd---GSVKARNYQLaS 370 Clonorchi...
XP_002573010        67 YGTYFYDVKNi--fDRKLLLGVGPSDIVLCNSTgg--viERFPFCRVHTITNSARVVTLNLLEEd---GSVKGQNYQLsS 139 Schistoso...
Feature 1                     ############                   
D3ZDI6             258 TRAASGLYRAITETHAFYRCDTVTSAVMMQYSRDLKGH 295 Norway rat
XP_003384766       273 RGAAQALYRSVTEFHTFFQQDKVSSVVKNAGYCKSIIG 310 Amphimedon queenslandica
XP_001945688       269 SLGANTLYRALTEKHAFYSCETVRGAVTSQYIRDLKGT 306 pea aphid
EFR30225           378 HRTAASLYRAITEKHVFYSCETVRPIVTTQFIRDLKGT 415 Anopheles darlingi
XP_975394          269 SHVASSLYRAITEKHAFYSCETVRSAVTAQFIRDLKGT 306 red flour beetle
XP_790458          264 KEIAEGLYRSITEKVEFFTSETVSEPVKDQFVRDFRGS 301 purple urchin
XP_396349          241 SQSASGLYRAITEKHAFYSCETVRSAVTAQFIRDLKGT 278 honey bee
FlyBase:CG12489-PA 398 QPIAAGLYRSITERHAFYVCDKVRGVVTNQFTRDLKGT 435 fruit fly
GAA49268           371 PRLASSLYRLVNELYAFFRCDSVRKEVLSQTRRDILDA 408 Clonorchis sinensis
XP_002573010       140 TRLAYSLYRTITEVHAFFQSDSIKQSLIDQTVRESFTS 177 Schistosoma mansoni

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