3J20,3J3A


Conserved Protein Domain Family
uS4_arch

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TIGR01018: uS4_arch 
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ribosomal protein uS4, eukaryotic/archaeal type
This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 273397
Aligned: 9 rows
Threshold Bit Score: 232.315
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3J20_D         1 MGDPKR--QRKK-YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAAR------GKQAEIERE 71  Pyrococcus furi...
P54020         1 MGDPRR--RFKKtYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLISDR------TEQGAKEAV 72  Methanocaldococ...
O59306         1 MGDPKR--QRKK-YETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAAR------GKQAEIERE 71  Pyrococcus hori...
O28000         1 MGDPKR--HRKK-YTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIglpgkeGEIAKAKAQ 77  Archaeoglobus f...
O26142         1 MGHPRK--ARKK-YDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMA------SEHTGKERE 71  Methanothermoba...
Q09757         2 PSAPRK---QSKtYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDe----kDPKRLFEGN 74  Schizosaccharom...
WP_010866565   1 MGDPRK--PRKK-WEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLP------PEVRREASR 71  Aeropyrum pernix
AAA85659       1 MPVARSw-VCRKtYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDe----kDPRRLFEGN 75  human
3J3A_J         1 MPVARSwvCRKT-YVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDe----kDPRRLFEGN 75  cattle
3J20_D        72 QLLARLKRLGLLP-EDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEED 150 Pyrococcus furi...
P54020        73 QLFNVLKKYGILKiENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEED 152 Methanocaldococ...
O59306        72 QLLSRLKRLGLLP-EDAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEED 150 Pyrococcus hori...
O28000        78 TVIKKLNKMGILP-ENATLDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELES 156 Archaeoglobus f...
O26142        72 QLLGHLVRTGILN-EGAKLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEED 150 Methanothermoba...
Q09757        75 AIIRRLVRLGILDeTRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQK 154 Schizosaccharom...
WP_010866565  72 VLVESLYRMGLIDnPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEK 151 Aeropyrum pernix
AAA85659      76 ALLRRLVRLGVLDeGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQK 155 human
3J3A_J        76 ALLRRLVRIGVLDeGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQK 155 cattle
3J20_D       151 TITYARTSPFA 161 Pyrococcus furiosus DSM 3638
P54020       153 KISYAKNSPFN 163 Methanocaldococcus jannaschii DSM 2661
O59306       151 KITYARTSPFA 161 Pyrococcus horikoshii OT3
O28000       157 KISFYRNSPLA 167 Archaeoglobus fulgidus DSM 4304
O26142       151 KIGFYPSSPMK 161 Methanothermobacter thermautotrophicus str. Delta H
Q09757       155 HIDFALSSPYG 165 Schizosaccharomyces pombe 972h-
WP_010866565 152 LIDYAPGSPFK 162 Aeropyrum pernix
AAA85659     156 HIDFSLRSPTG 166 human
3J3A_J       156 HIDFSLRSPYG 166 cattle
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